XLOC_033000 (jade3)


Basic Information

Item Value
gene id XLOC_033000
gene name jade3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37478765 ~ 37513133 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064117
TCTGCTTCCCCTGGCTGGGCAAGCAGTGGGGCCGTGAACGGGGCGGGCTCTAGGACCCAGCGTTTGGGTAGTACAATAGAGCTGTTGTGTCGTGGTGAAGAGGGTGATTTCTGCTTTTGGGATATTGACAGTGGGACAGAAACCAGAAAAATACGGAAAACACCGGTATTTACTGCACCTCAGCGCTGCTGACTTGAAGACAGCCTTGCGGAGTCTATCGGCGCTCACGATCGTCCTGAAGCACAGCATTTTTGGATGTTAGGCATGAGCGAGAGAAAGAAGCCGCACAAGCGAGGAAAATAGTAGCATGCTTTTTGAATTTATGGATAAGTCAGGATGAAACGACTCAGGACTCCAAGCAGCAGTGACAGTTCAGACAATGAAAGTCCCTCGACGTCCTTTTCCTCTAACAAGTATGGAAGCAAACCAGGCACCCCCGCCTCTGCTCAGAAGAAACCAGCAGAGgTGTTCAGAAAAGACCTGATCAGTGCGATGAAGCTGCCAGACTCTCACCATATTTCTTCAGAGGATTATTACCTGTTGGCAGACACATGGAAGCAGGAATGGGAGAAAGGAGTGCAAGTGCTGGCCAGTCCAGACACTATCCCTCAGCCCTCTGTGAGaataaTCACAGAGAAGCCAAAGGAAGTGCTCTTCTCCAAACCAAGGAAATATATTCAGTGCTGGAGTCAGGACTCCACAGAGACGGGCTACGTCAACATTAAGGAGCTGGCGGAGGCTATGTGCAGATACGACCTGGACGATATGGATTTGTACTGGCTCCAGCAGCTCAATGCAGAGCTGGGGATGATGGGTGATGGAGTGGTGGATGAACTGACGATGGAGCGGGTGATGGAGGCACTGGAGAGACAGTGTCATGAAAACATGAACCACGCCATCGAGACCGAGGAAGGTTTGGGTATCGAGTATGACGAGGACGTCATCTGTGATGTGTGTCGCTCACCTGACAGCGAGGAGGGCAATGATATGGTGTTTTGTGACAAGTGCAACATTTGCGTGCACCAGGCCTGCTATGGCATTGTGAAGGTGCCAGATGGGAACTGGCTGTGCAGAACGTGTGTGCTTGGCATCACTCCTCAGTGCCTTCTGTGTCCTAAAACGGGAGGCGCAATGAAAGCCACCAGAGCTGGCACTAAATGGGCTCATGTTAGCTGTGCCCTCTGGATACCTGAGGTGAGCATTGCGTGCCCGGAGCGCATGGAGCCCATCACCAAAGTGTCTCACATTCCACCCAGCCGCTGGTCACTCATCTGCAGTCTCTGTAAACTCAAGACTGGAGCCTGCATACAGTGTTCGGTTAAGAACTGCACCATACCTTTCCACGTCACCTGTGCCTTTGAGCACAGCCTGGAGATGAAGACCATCCTGGATGAAGGTGATGAAGTCAAGTTTAAATCCTACTGCCTAAAGCACAGCAAACCCAAAGCAGGAGAACCGGGCTTGAGTCCGGCCCGCCACAAACCTCCAACCGAGACTGACAAACTGAGTCTGAGGGCACAGAAGCTTCAGGAGCTGGAGGAGGAGTTTTACACGTATGTCCATCCTGAAGAAGTGGCCCATGACCTCAGCCTGCCGCTCCACCTGCTGGATTTCATCTTTCAATACTGGAAGATGAAGAGGAAAAGCAACTTCAACAAGGCCCTGCTGCCACCTAAAGAAGATGAGGAGAACCTTCTGCTGCAGCCACAGGAGGACAGCATTCATACACGCATGCGCATGTTTATGCACCTGCGCCAGGACCTGGAGAGGGTGAGAAACTTGTGCTACATGGTGAGTCGAAGAGAGAAACTGAAGCTGTCCCAGAGTAAAGCTCAAGAACAGATTTTCAATCTACACGTTAAGCTTGTCAACCAAGAGTTGTCTGCAGGGCTTCCTGTGTCCTCTTCAATAGAGAACCTACTTTTCCACCCTCCTCCCAGAATAACCTTAAAACTCAAAATGCCCAAAGTACAGCTCGGTAACGGCAAAAGCAGCTCCAAATCCGGTAATGGACCCTTATGCCCGGATAACAGCTGCAACCTTTATGACACTAGTGAAGGAGGGATCGGTCAGGGCAAACCGCAGCTCCATCTCGGAAGACAACGAATAGAGGAGCGAATCAACGGTATCCTACCCGCCTCCATATACATCCGACGAGATGGCGGGACGCCACCGTTAGCGGTAAAACAATCAGGCAAACCATTAGCTCTGCACGCCGCCCTTCACGGTCAGTCATCCAACGGGAAGACCAAAAATGAAGCGGAAAAAACGCGGCAAATTAAATCCAACGGCATTCTAGACAAACCCATTCTCCAAAGAGACACTTCCTGCCTGGCGGCCAGCGAGAAAGACCCCCGCAGTGAGATTTCAGGGAAAAGTCAGCCATCGGGATTCCACAAAACCTCTCTTGAGCACTTCAGTCGATCTCTCAAGGAGGCCACTGTGAGTTTAGTACGGACCGAGGACCTTCGGACCTTTGAAAAGAACTCACGCAAGTCCTCCGGATTCTCAAAACCTCTTTCCACCGAGCGGCCGCAAGGGGGCGGCAGAGCGTCTCAGGAAAGCGATGGTTACTGTCCGGATGCAGAGCTCAGTGATTCTGAACCCGAAGCCAAAGGGAAGTGCAGGCAAGGAGGAAGGACTCAAAACCAGAGAGGAGATTATGTCAAGTCTGCCAGTCGAGCAAAACACTCTTATGGCTCTAGGACATCGGTGCAAAGGTGACAATCTTCAAAAAGCATTACAAACATCCCACTGCCACAAGTTATTATGGTTTCTTAGACTTCTGGTGGTACATCGGAAGTGCCAGATTCTAGTTTTCCTCTGTTGAGGatcatttgtttgctttttgttgaGTGCCAAAACATGGCTGGCTGGTTGGGGAAGTGAAGTtagtctatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgggactGATTTATCACTGTGTTTTCTATCCTGCCGATGTGTTTCTGCTGCCCTTGGACTCATGAGAGTATTATGGGTGGTGAAGCAGTGTTGTACATAAAAAGCAAGGTCGTTTTTTTAGACTGTACATAGTAGTTCGTGTTGAGACGTGGAAAACATTGAGGTGTTTTCCACGTACAGAAACATCATACTTTCTTACTGACATgcttatgcaaaaaaaataaaagacttgAGGACTCTGATCTGACAAA
>TCONS_00064118
TTGCAGGATAAGTCAGGATGAAACGACTCAGGACTCCAAGCAGCAGTGACAGTTCAGACAATGAAAGTCCCTCGACGTCCTTTTCCTCTAACAAGTATGGAAGCAAACCAGGCACCCCCGCCTCTGCTCAGAAGAAACCAGCAGAGgTGTTCAGAAAAGACCTGATCAGTGCGATGAAGCTGCCAGACTCTCACCATATTTCTTCAGAGGATTATTACCTGTTGGCAGACACATGGAAGCAGGAATGGGAGAAAGGAGTGCAAGTGCTGGCCAGTCCAGACACTATCCCTCAGCCCTCTGTGAGaataaTCACAGAGAAGCCAAAGGAAGTGCTCTTCTCCAAACCAAGGAAATATATTCAGTGCTGGAGTCAGGACTCCACAGAGACGGGCTACGTCAACATTAAGGAGCTGGCGGAGGCTATGTGCAGATACGACCTGGACGATATGGATTTGTACTGGCTCCAGCAGCTCAATGCAGAGCTGGGGATGATGGGTGATGGAGTGGTGGATGAACTGACGATGGAGCGGGTGATGGAGGCACTGGAGAGACAGTGTCATGAAAACATGAACCACGCCATCGAGACCGAGGAAGGTTTGGGTATCGAGTATGACGAGGACGTCATCTGTGATGTGTGTCGCTCACCTGACAGCGAGGAGGGCAATGATATGGTGTTTTGTGACAAGTGCAACATTTGCGTGCACCAGGCCTGCTATGGCATTGTGAAGGTGCCAGATGGGAACTGGCTGTGCAGAACGTGTGTGCTTGGCATCACTCCTCAGTGCCTTCTGTGTCCTAAAACGGGAGGCGCAATGAAAGCCACCAGAGCTGGCACTAAATGGGCTCATGTTAGCTGTGCCCTCTGGATACCTGAGGTGAGCATTGCGTGCCCGGAGCGCATGGAGCCCATCACCAAAGTGTCTCACATTCCACCCAGCCGCTGGTCACTCATCTGCAGTCTCTGTAAACTCAAGACTGGAGCCTGCATACAGTGTTCGGTTAAGAACTGCACCATACCTTTCCACGTCACCTGTGCCTTTGAGCACAGCCTGGAGATGAAGACCATCCTGGATGAAGGTGATGAAGTCAAGTTTAAATCCTACTGCCTAAAGCACAGCAAACCCAAAGCAGGAGAACCGGGCTTGAGTCCGGCCCGCCACAAACCTCCAACCGAGACTGACAAACTGAGTCTGAGGGCACAGAAGCTTCAGGAGCTGGAGGAGGAGTTTTACACGTATGTCCATCCTGAAGAAGTGGCCCATGACCTCAGCCTGCCGCTCCACCTGCTGGATTTCATCTTTCAATACTGGAAGATGAAGAGGAAAAGCAACTTCAACAAGGCCCTGCTGCCACCTAAAGAAGATGAGGAGAACCTTCTGCTGCAGCCACAGGAGGACAGCATTCATACACGCATGCGCATGTTTATGCACCTGCGCCAGGACCTGGAGAGGGTGAGAAACTTGTGCTACATGGTGAGTCGAAGAGAGAAACTGAAGCTGTCCCAGAGTAAAGCTCAAGAACAGATTTTCAATCTACACGTTAAGCTTGTCAACCAAGAGTTGTCTGCAGGGCTTCCTGTGTCCTCTTCAATAGAGAACCTACTTTTCCACCCTCCTCCCAGAATAACCTTAAAACTCAAAATGCCCAAAGTACAGCTCGGTAACGGCAAAAGCAGCTCCAAATCCGGTAATGGACCCTTATGCCCGGATAACAGCTGCAACCTTTATGACACTAGTGAAGGAGGGATCGGTCAGGGCAAACCGCAGCTCCATCTCGGAAGACAACGAATAGAGGAGCGAATCAACGGTATCCTACCCGCCTCCATATACATCCGACGAGATGGCGGGACGCCACCGTTAGCGGTAAAACAATCAGGCAAACCATTAGCTCTGCACGCCGCCCTTCACGGTCAGTCATCCAACGGGAAGACCAAAAATGAAGCGGAAAAAACGCGGCAAATTAAATCCAACGGCATTCTAGACAAACCCATTCTCCAAAGAGACACTTCCTGCCTGGCGGCCAGCGAGAAAGACCCCCGCAGTGAGATTTCAGGGAAAAGTCAGCCATCGGGATTCCACAAAACCTCTCTTGAGCACTTCAGTCGATCTCTCAAGGAGGCCACTGTGAGTTTAGTACGGACCGAGGACCTTCGGACCTTTGAAAAGAACTCACGCAAGTCCTCCGGATTCTCAAAACCTCTTTCCACCGAGCGGCCGCAAGGGGGCGGCAGAGCGTCTCAGGAAAGCGATGGTTACTGTCCGGATGCAGAGCTCAGTGATTCTGAACCCGAAGCCAAAGGGAAGTGCAGGCAAGGAGGAAGGACTCAAAACCAGAGAGGAGATTATGTCAAGTCTGCCAGTCGAGCAAAACACTCTTATGGCTCTAGGACATCGGTGCAAAGGTGAC
>TCONS_00064119
GTCGTCCAAGTTACCGGTTAAAACCTGATGAGGCAAATCTGGCAATGagatcttaaaatgtatggaaaaagtcttaaaatgtcttaaaaggtGTTGAATTTAACTCCATGATCCTTGTATAAAGGTCCCTCGACGTCCTTTTCCTCTAACAAGTATGGAAGCAAACCAGGCACCCCCGCCTCTGCTCAGAAGAAACCAGCAGAGgTGTTCAGAAAAGACCTGATCAGTGCGATGAAGCTGCCAGACTCTCACCATATTTCTTCAGAGGATTATTACCTGTTGGCAGACACATGGAAGCAGGAATGGGAGAAAGGAGTGCAAGTGCTGGCCAGTCCAGACACTATCCCTCAGCCCTCTGTGAGGTATGTCACTTTGAGTATAAACTGGGGGGAAGAAAAGTATTGGACGTGCACGCTCTTGCATATGGTTTAAGGGGGTCTGGTTATGTTTTTATTCTTTCAGCTTTGCAGTTTTTGCATGAAAGAGATCTTCAACAAAACCTGAATTGAACTGAAATGCATTGAACTCAACGAACAAGCCAGTATTGTGCGGTGAACCAGTCcatgtaaatataaaatgagcTTAAATTAACTATTTCTAA

Function

symbol description
jade3 Predicted to enable metal ion binding activity. Predicted to be involved in histone H3 acetylation; histone H4-K5 acetylation; and histone H4-K8 acetylation. Predicted to be part of histone acetyltransferase complex. Orthologous to human JADE3 (jade family PHD finger 3).

GO:

id name namespace
GO:0043966 histone H3 acetylation biological_process
GO:0043981 histone H4-K5 acetylation biological_process
GO:0043982 histone H4-K8 acetylation biological_process
GO:0000123 histone acetyltransferase complex cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-928 Predicted to enable metal ion binding activity. Predicted to be involved in histone H3 acetylation; histone H4-K5 acetylation; and histone H4-K8 acetylation. Predicted to be part of histone acetyltransferase complex. Orthologous to human JADE3 (jade family PHD finger 3).

Ensembl:

ensembl_id ENSDARG00000019614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064117 False 3243 mRNA 0.50 12 37478765 37513133
TCONS_00064118 False 2406 mRNA 0.52 10 37479283 37499574
TCONS_00064119 True 601 processed_transcript 0.42 2 37498146 37498856

Neighbor

gene id symbol gene type direction distance location
XLOC_032999 plcxd1 coding downstream 8990 37460269 ~ 37469775 (-)
XLOC_032998 si:dkey-66a8.7 coding downstream 18587 37451341 ~ 37460178 (-)
XLOC_032997 BX324166.3 coding downstream 31622 37447028 ~ 37447143 (-)
XLOC_032995 nit2 coding downstream 37245 37431169 ~ 37441520 (-)
XLOC_032996 BX324166.2 coding downstream 39395 37439255 ~ 37439370 (-)
XLOC_033001 rp2 coding upstream 778 37513911 ~ 37525879 (-)
XLOC_033002 chst7 coding upstream 90835 37603968 ~ 37622576 (-)
XLOC_033003 BX322552.1 coding upstream 102233 37615366 ~ 37615483 (-)
XLOC_033004 nipa2 coding upstream 220475 37733608 ~ 37745508 (-)
XLOC_033005 nipa1 coding upstream 232586 37745719 ~ 37749711 (-)
XLOC_032992 NA non-coding downstream 134171 37342328 ~ 37344594 (-)
XLOC_032991 CT033823.2 non-coding downstream 708696 36769939 ~ 36770069 (-)
XLOC_032990 CT033823.3 non-coding downstream 734514 36744134 ~ 36744251 (-)
XLOC_033006 CR407584.1 non-coding upstream 619378 38132511 ~ 38358080 (-)
XLOC_033008 CR628341.2 non-coding upstream 1084536 38597669 ~ 38597784 (-)
XLOC_033009 NA non-coding upstream 1246413 38759546 ~ 38764326 (-)
XLOC_033024 NA non-coding upstream 1978713 39491846 ~ 39521832 (-)

Expression


Co-expression Network