G1401587



Basic Information


Item Value
gene id G1401587
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65553392 ~ 65554809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1600603
acattattaaacactactctaccactacatatctacaataccacacattattacacactactctactacaacatatctacaatacaacacattattacactctactctaccacaacatatctacaatacaacacattattacacactaccacaacatatctacattacaacacattattacactctaccacaacatatctacaatacaacacattatcacacactactctaccacaacatatctacaatacaacacattattacacactactctaccacaacatatctacaatacaacacattattacacactactctactatgtGACCTgtcttctcctttcccctcttTTCCTGTCAATTCTgtcttctcctgttctctcttttcCTGTCCTCTTTTGTCTTCTTCTGTCCTCTTTTCCTGTCCTCTCTTGTCTTCTCCTGTCCAGTCATCTCCTTTCC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1600603 True 461 lncRNA 0.36 2 65553392 65554809

Neighbor


gene id symbol gene type direction distance location
wnt5a LOC106566524 coding downstream 423625 65094789 ~ 65129767 (-)
LOC110492545 lrtm1 coding downstream 561921 64984262 ~ 64991471 (-)
LOC110492544 NA coding downstream 864811 64682618 ~ 64688581 (-)
LOC110492543 LOC106566530 coding downstream 879772 64666724 ~ 64673620 (-)
LOC110492546 NA coding downstream 886874 64653790 ~ 64666518 (-)
tlr9 tlr9 coding upstream 68366 65623175 ~ 65628493 (-)
apeh apeh coding upstream 78321 65633130 ~ 65644141 (-)
cttnbp2nlb cttnbp2nl coding upstream 105471 65660280 ~ 65704778 (-)
LOC110492562 LOC106568106 coding upstream 160902 65715711 ~ 65754610 (-)
ddx20 ddx20 coding upstream 714828 66269637 ~ 66276483 (-)
G1401574 NA non-coding downstream 35848 65517258 ~ 65517544 (-)
G1401568 NA non-coding downstream 42811 65510332 ~ 65510581 (-)
G1401563 NA non-coding downstream 46003 65507172 ~ 65507389 (-)
G1401560 NA non-coding downstream 48832 65504338 ~ 65504560 (-)
G1401558 NA non-coding downstream 50389 65502776 ~ 65503003 (-)
G1401596 NA non-coding upstream 21599 65576408 ~ 65576899 (-)
G1401606 NA non-coding upstream 49418 65604227 ~ 65604892 (-)
G1401611 NA non-coding upstream 62002 65616811 ~ 65617245 (-)
G1401376 capza1 non-coding upstream 93587 65648396 ~ 65653934 (-)
G1401378 NA non-coding upstream 99808 65654617 ~ 65654855 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1104920 64445355 ~ 64485638 (-)
G1400578 NA other downstream 1242936 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 1267399 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 1268845 64284207 ~ 64284547 (-)
G1400552 NA other downstream 1295959 64256926 ~ 64257433 (-)
G1401617 NA other upstream 80673 65635482 ~ 65636372 (-)
G1402686 srpk3 other upstream 870742 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 930092 66484901 ~ 66494667 (-)
G1403498 NA other upstream 1888612 67443421 ~ 67444179 (-)

Expression



Co-expression Network