XLOC_033001 (rp2)


Basic Information

Item Value
gene id XLOC_033001
gene name rp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37513911 ~ 37525879 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064120
ATGGGGTGCTTCTTCTCCAAAAAATCGAGGAGGAAATCTCCCAAAAAAGACGCTGCTTTACCCACCGGGGACGAGAGCGCTACGGGCAATGACCTCGCCGAAACCAACAACACTGCGCTGGGCAGCAACAGCAACCAGGAGGCTCCAAAGCAATACAGCTGGGACAAACGAGAAAAGGTCGACCCCAAAGACTTTATGCTGACAGGCCTCAAGAATGAGACCGTGGGCAGGTTACCAGGCAAGCTCAACGGTCAGCAGTTTGTCATTCAGGACTGCGAAAACTGTAACATATTTGTGTTGGACCATTCGGCAACTATTACCATCGATGACTGTGTGAACTGCCGCATTGTGTTAGGTCCGGTCAAAGGCAGTGTGTTCTTCAGAGATTGTAAAGACATCAAATGCGTGGTGGCCTGTCAGCAGTTCCGCACGAGAGACTGCAAGAAAATGGACGTCTTTTTGTGCTGCGCCACCCAGCCCATAATCGAGTCTTCTACAGGCATGAAGTTTGGCTGCTTCCAGTATTACTACCCTGAGCTGGCTTTCCACTTTAAAGATGCAGGTCTCAGCATTTTTAACAACAACTGGAGCAATATTCATGACTTCACACCTGTCTCTGGAGAAACTAACTGGAGTCTCCTGCCAGAGGATGCTGTTGTCCTGGACCATGTGCCTCTTCCAGATCCTGAGTCAGAGTTCAAGTCTGTGAGAATTGCTACTGAAGCAGGTCGGAGTATAGTGCCTCTGACTAAAGGGAGCCGGCGAACAGAGAGCGAAGAGTCTTGTCTGTTTGTGTTCTTCGCTGGAGACTACACCACTGCTAATGCCCGCAAGCTCATCGATGAGGCAACTGCTAAAGGCTTTGTCCTGATTCAGACTAAAGAGGTTTCCATGCGCCCTGAGGATGTGAGCCGAGTGTTCCAGAATAATGCAGAGAGCCTTACTGAATGGATCACCAAAGGTCCAGTGGTAGCGCTTGAGCTGAATGGAGACGGTGTGGTGGAAGCGTGTCGATCCTTTGCCAATGAAGTGTTCAACGGAACACagCTGTTTGTTTCTGAGAGCAAAAATACATCCTCGCGTGATGTTGACAACTTTTTCAACTTTGCTGACATGCAGATGGGCCTGTGAAACTGGGGCAGAGGGTCAGCTCAATTTAACGTGGGTTCAAATTTTCTTGGTTTTGTCAATTTTGATACAGTATAATGAAATTACATCATATGTGATGCCACTGAGACCATTTAATGGGTTAAAACCACTATTCACTTTTTTTTCctccagaaaaaaaacagaaaattgtTCTAGGGTGGATCTGACAATTTGACATTTTCATGTTGATTATATTGACATATTGTCAGCGAGTTTATTTGGATCCAATCAAGAAGGCAAGTGCCTTTAGATAGAGTACTAGAACTAAAGTCTAATCAAACATTGCTGTGGACAATTTCATCGCTTATGCTGAAAATAATGAATTTGATTATATAGATATTTAttgaatttccttttttttcataaatgtataGCTGGAAATTGTTTTACTCTGTCTTGGCTGTATACAGTACGTCTCCTTTACTTAGTGTATAGTCATCATGCCTGTGTATATTTGTTAGATGTAAAAACAATATTGTTCAGATTTTGTCACATGCCTAAAAACATGAATTGtattgaattagatttttttatatgaccgatataaatgtattttattttacagttagcatagctttttatttgtatgtttttttcagtATTGTCTTGTTTTTCAAATGACATCTGTTTTTATTGTATAAGTTTTTACAGTAGCACTGTTCTGAAAAGAATGTAAATGCTGAAACTGATAGGTCGAATGTACTACTAAACAGGAGCATTAATCGTCTCCTTTACATTGTTCTATTTTTCTAGGATCATTTTAAAGAGCACAACAACTTTTCTGTGACCAGAATCATTTGTAcacttcaaaagaaaaaatagtgatttttttttttttcttctaaatgttcCTATTTGTACAAGACAGTTTTTTAGGGATGAATAATAACTGTGATTTGTCAATACAATCATACTGATCGAAAGTTGTCTCATCTTTTTTCCACATGCAAATAAGCACAACACTAAATGTGAATGTATTACGACAAATGCCAACTAGTGAATAGTTTTGTTAGTTGAGTACATATTTGCTCAGAGAAAGAGATTGTGAGTAACTGTAAGTGGTGTTGTGAAATGTTGTGGTTCTGAATTTTGACCGCATTGCTTTTataataatttctttaataataatCTCTTTCTGTCAGTAAAAAGTATTcaaatatcatgtttaaaaaaaacaaaaagagttaGAGTAGTTGTCTGatttgttgagcacaaaaaagTTGTATTTTCTTCAGGGGTCCAATATAAACATCAGGGGACAGGTTGAAATTAATAGTTTAATTCTGGTAGGACAGATTTTTACCTTGCTGGttataaaagaatcttaaaaatgCACAATATTAATCATTAAATCAGTTTTCTACCGTGCTAAAAACAAGAAGTGTTATGTTATATAAAGCTATgtgtataatacatttattttagtaaattccATGGAATGTTTGCTTTGGTATATATTGCAAAATGAGTCAAAATGAGATGCATTAAATGCGTTTCAAAccaattttgtgatttatgtgatataaaaaatataggtgaaataatgtatttaaatgtattcaaattatttttattctaaatatgaCTGACAAGTTTGTTTGGtagaaaaat
>TCONS_00064121
GTAACGCTGTCCGCTGTAATGATTGGCTGGCTCCAGGGTCAAGGAAACGGGAAGCGCACAGGTTGCGTGTTCTTGATTACTTTCTGGGGAGGAGAAGAAGCCAGAGCGCGACTGCGGCGGATCGACACTTTCAGAAACGCCTGGTATTTACAACCGGAGGGGCGTGCTGACAAATAGCACAACTCGTCGTCCATAAATGGGGTGCTTCTTCTCCAAAAAATCGAGGAGGAAATCTCCCAAAAAAGACGCTGCTTTACCCACCGGGGACGAGAGCGCTACGGGCAATGACCTCGCCGAAACCAACAACACTGCGCTGGGCAGCAACAGCAACCAGGAGGCTCCAAAGCAATACAGCTGGGACAAACGAGAAAAGGTCGACCCCAAAGACTTTATGCTGACAGGCCTCAAGAATGAGACCGTGGGCAGGTTACCAGGCAAGCTCAACGGTCAGCAGTTTGTCATTCAGGACTGCGAAAACTGTAACATATTTGTGTTGGACCATTCGGCAACTATTACCATCGATGACTGTGTGAACTGCCGCATTGTGTTAGGTCCGGTCAAAGGCAGTGTGTTCTTCAGAGATTGTAAAGACATCAAATGCGTGGTGGCCTGTCAGCAGTTCCGCACGAGAGACTGCAAGAAAATGGACGTCTTTTTGTGCTGCGCCACCCAGCCCATAATCGAGTCTTCTACAGGCATGAAGTTTGGCTGCTTCCAGTATTACTACCCTGAGCTGGCTTTCCACTTTAAAGATGCAGGTCTCAGCATTTTTAACAACAACTGGAGCAATATTCATGACTTCACACCTGTCTCTGGAGAAACTAACTGGAGTCTCCTGCCAGAGGATGCTGTTGTCCTGGACCATGTGCCTCTTCCAGATCCTGAGTCAGAGTTCAAGTCTGTGAGAATTGCTACTGAAGCAGGTCGGAGTATAGTGCCTCTGACTAAAGGGAGCCGGCGAACAGAGAGCGAAGAGTCTTGTCTGTTTGTGTTCTTCGCTGGAGACTACACCACTGCTAATGCCCGCAAGCTCATCGATGAGGCAACTGCTAAAGGCTTTGTCCTGATTCAGACTAAAGAGGTTTCCATGCGCCCTGAGGATGTGAGCCGAGTGTTCCAGAATAATGCAGAGAGCCTTACTGAATGGATCACCAAAGGTCCAGTGGTAGCGCTTGAGCTGAATGGAGACGGTGTGGTGGAAGCGTGTCGATCCTTTGCCAATGAAGTGTTCAACGGAACACagCTGTTTGTTTCTGAGAGCAAAAATACATCCTCGCGTGATGTTGACAACTTTTTCAACTTTGCTGACATGCAGATGGGCCTGTGAAACTGGGGCAGAGGGTCAGCTCAATTTAACaaaaaaaacagaaaattgtTCTAGGGTGGATCTGACAATTTGACATTTTCATGTTGATTATATTGACATATTGTCAGCGAGTTTATTTGGATCCAATCAAGAAGGCAAGTGCCTTTAGATAGAGTACTAGAACTAAAGTCTAATCAAACATTGCTGTGGACAATTTCATCGCTTATGCTGAAAATAATGAATTTGATTATATAGATATTTAttgaatttccttttttttcataaatgtataGCTGGAAATTGTTTTACTCTGTCTTGGCTGTATACAGTACGTCTCCTTTACTTAGTGTATAGTCATCATGCCTGTGTATATTTGTTAGATGTAAAAACAATATTGTTCAGATTTTGTCACATGCCTAAAAACATGAATTGtattgaattagatttttttatatgaccgatataaatgtattttattttacagttagcatagctttttatttgtatgtttttttcagtATTGTCTTGTTTTTCAAATGACATCTGTTTTTATTGTATAAGTTTTTACAGTAGCACTGTTCTGAAAAGAATGTAAATGCTGAAACTGATAGGTCGAATGTACTACTAAACAGGAGCATTAATCGTCTCCTTTACATTGTTCTATTTTTCTAGGATCATTTTAAAGAGCACAACAACTTTTCTGTGACCAGAATCATTTGTAcacttcaaaagaaaaaatagtgatttttttttttttcttctaaatgttcCTATTTGTACAAGACAGTTTTTTAGGGATGAATAATAACTGTGATTTGTCAATACAATCATACTGATCGAAA

Function

symbol description
rp2 Predicted to enable GTPase activator activity. Acts upstream of or within animal organ development; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and plasma membrane. Predicted to be active in cilium and periciliary membrane compartment. Is expressed in several structures, including fertilized egg; liver and biliary system; pleuroperitoneal region; sensory system; and trunk. Used to study retinitis pigmentosa 2. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 2. Orthologous to human RP2 (RP2 activator of ARL3 GTPase).

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0000902 cell morphogenesis biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0048793 pronephros development biological_process
GO:0042461 photoreceptor cell development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0015031 protein transport biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:1990075 periciliary membrane compartment cellular_component
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2795 Predicted to enable GTPase activator activity. Acts upstream of or within animal organ development; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and plasma membrane. Predicted to be active in cilium and periciliary membrane compartment. Is expressed in several structures, including fertilized egg; liver and biliary system; pleuroperitoneal region; sensory system; and trunk. Used to study retinitis pigmentosa 2. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 2. Orthologous to human RP2 (RP2 activator of ARL3 GTPase).

Ensembl:

ensembl_id ENSDARG00000044339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064120 False 2760 mRNA 0.37 5 37513911 37525683
TCONS_00064121 True 2148 mRNA 0.42 6 37514599 37525879

Neighbor

gene id symbol gene type direction distance location
XLOC_033000 jade3 coding downstream 778 37478765 ~ 37513133 (-)
XLOC_032999 plcxd1 coding downstream 44136 37460269 ~ 37469775 (-)
XLOC_032998 si:dkey-66a8.7 coding downstream 53733 37451341 ~ 37460178 (-)
XLOC_032997 BX324166.3 coding downstream 66768 37447028 ~ 37447143 (-)
XLOC_032995 nit2 coding downstream 72391 37431169 ~ 37441520 (-)
XLOC_033002 chst7 coding upstream 78089 37603968 ~ 37622576 (-)
XLOC_033003 BX322552.1 coding upstream 89487 37615366 ~ 37615483 (-)
XLOC_033004 nipa2 coding upstream 207729 37733608 ~ 37745508 (-)
XLOC_033005 nipa1 coding upstream 219840 37745719 ~ 37749711 (-)
XLOC_033006 CR407584.1 coding upstream 606632 38132511 ~ 38358080 (-)
XLOC_032996 BX324166.2 non-coding downstream 74541 37439255 ~ 37439370 (-)
XLOC_032992 NA non-coding downstream 169317 37342328 ~ 37344594 (-)
XLOC_032991 CT033823.2 non-coding downstream 743842 36769939 ~ 36770069 (-)
XLOC_032990 CT033823.3 non-coding downstream 769660 36744134 ~ 36744251 (-)
XLOC_033008 CR628341.2 non-coding upstream 1071790 38597669 ~ 38597784 (-)
XLOC_033009 NA non-coding upstream 1233667 38759546 ~ 38764326 (-)
XLOC_033024 NA non-coding upstream 1965967 39491846 ~ 39521832 (-)

Expression


Co-expression Network