G1401617


Basic Information

Item Value
gene id G1401617
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65635482 ~ 65636372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1600638
AGTTggctgctcgatccacacagcagacattgtgggctaggttaggaatgctgtgttgcacgtgtagcacaacattttacgtggcgttattacgtcatgtacctatgttatataggtatgtacctcatctacctacactatataggtatgtaggtcatctacctatgttatataggtatgtaggtcatctacctacgttatataggtatgtacctcatctacctatgttatataggtatgtaggtcatctacctacgttacataggtatgtacctcatctacctacgttacataggtatgtacctcatctacctacgttatataggtatgtacctcatctacctacgttatataggtatgtacctcatctacctacgttatataggtatgtacctcatctacctacgttatataggtatgcacgtcatctacctacgttatatacgtaTGTAcggtagctttgacatcggtttttcagatcggcgttaaactagacatcggctgATACCGATGTTGGCGGTTTTAGCTAATATCGACCGATTCCACTAAGttcaccgatatattgtgcatTCCTGGTCTATAGTATTCAGCCCTAGAATCAGTCTGTCTGACTGACGTTTCATTTTCACAGTACTTTTGTAGTCTCTGTCATCTACCCTCTCAGACCACTCTGCTTCCTCC

Function

NR:

description
germinal-center associated nuclear protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1600638 True 681 TUCP 0.41 3 65635482 65636372

Neighbor

gene id symbol gene type direction distance location
tlr9 tlr9 coding downstream 6989 65623175 ~ 65628493 (-)
LOC110518541 LOC106566519 coding downstream 15190 65131650 ~ 65620292 (-)
wnt5a LOC106566524 coding downstream 505715 65094789 ~ 65129767 (-)
LOC110492545 lrtm1 coding downstream 644011 64984262 ~ 64991471 (-)
LOC110492544 NA coding downstream 946901 64682618 ~ 64688581 (-)
cttnbp2nlb cttnbp2nl coding upstream 23908 65660280 ~ 65704778 (-)
LOC110492562 LOC106568106 coding upstream 79339 65715711 ~ 65754610 (-)
ddx20 ddx20 coding upstream 633265 66269637 ~ 66276483 (-)
LOC110492566 LOC106566511 coding upstream 644584 66280956 ~ 66296439 (-)
b4galt3 b4galt3 coding upstream 667217 66303589 ~ 66308067 (-)
G1401611 NA non-coding downstream 18237 65616811 ~ 65617245 (-)
G1401606 NA non-coding downstream 30590 65604227 ~ 65604892 (-)
G1401596 NA non-coding downstream 58583 65576408 ~ 65576899 (-)
G1401587 NA non-coding downstream 80673 65553392 ~ 65554809 (-)
G1401574 NA non-coding downstream 117938 65517258 ~ 65517544 (-)
G1401376 capza1 non-coding upstream 12024 65648396 ~ 65653934 (-)
G1401378 NA non-coding upstream 18245 65654617 ~ 65654855 (-)
G1401632 NA non-coding upstream 69375 65705747 ~ 65705961 (-)
G1401383 NA non-coding upstream 72253 65708625 ~ 65709149 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1187010 64445355 ~ 64485638 (-)
G1400578 NA other downstream 1325026 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 1349489 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 1350935 64284207 ~ 64284547 (-)
G1400552 NA other downstream 1378049 64256926 ~ 64257433 (-)
G1402686 srpk3 other upstream 789179 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 848529 66484901 ~ 66494667 (-)
G1403498 NA other upstream 1807049 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 3154817 68791189 ~ 68795025 (-)

Expression


Co-expression Network