G1401376 (capza1)


Basic Information

Item Value
gene id G1401376
gene name capza1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65648396 ~ 65653934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1600368
GATGATCAATTATTTTATTTGTACAACAGAATGGGGCAGTACAGTCCTGAACGTCGCATCAGAGTACAGCGCTAGTCAGTGTGAAGGTTTAACacagcacagaataactgatctCGAGTCAGCCTATGGTAATAGAGTAGGTGTATGTTGTGGCTGAACAGGGGTGTGTTCTGTGGGAAGCATGGTTCGCAGATAGATATTTACAGTAGAGAGCACACAAGTCTTTATTCGGCATGACAGAGAAGTGCGTCTGCCCTACACAATTCATTTCTAATTTAACATTTTGTAACATTGGACCCTCCTGAACAAAGCCCCTGGTTTAAACTAAGTACTGAAATGGCTGTGTATAGTTTAAGGTACCCAAGCACAGGTGTGAATATTACAGATGGGCTGAGCCTaagattaaattaaataaaaacctgCATAGCTAAATATAGATCTGCGTGTATACATGGGAGAAAGGGGTTCTTTAGCCcaggaaagacatttattggtaTGGTTTTCCTTCAACAAAAGAGAAAGGACACAGCAATTGTTGTTGTTGCCAAGGTAAGACAGAAGAGAATTGATTCAGAAACAGAGGAGGTTATGATACAGTCTTTCAGCCATGGTATCCTTCATTGGCTCAAGCAGAGGACACATACAACAGGAAGTGGAAGAGTACAGCAGGAAAAAAAGTAAACAGTACCCTCAAAACTGACTATATCGACGACCAGTCCTGTTAAGGGGAGAAATGGTGCTGATATGAACATCTATTGGAAAATGTCCCCTGCTTGGTGTGCTTAATTGCCATGTTTAAATTATTTCAACATGCATCCTTCCTTTCTTGAGGTAATCACTGATCTATACGTGACTAGATAAGAATAAGGAGTGTTTCCTACATCAAGGACAGAAGGAAGGATGCATTGTAAAATAATTCAACCTGGGGTCTTGGTGCAGCTGTTCAAGAGTGTCAACATGACAAGATGAAACTCAGTACACCTTTAGCAGACTCAAACTCCCCTCCTGTACCTCACTTCCTTTTTCTCCAAAACCAAAGCTTCTTTAAACAATACAGAACTGTGCCCAACAGACTGTCAATCTGCAGCTTGGTTTGTTGTATTTTCTCTTTGCTTTGCCCCAgactacaatatatatatataagcttTGGTTAGTCCTTGTGCGAGCGTGTGTTGCCAGCCCAGCGGTGTGAGTCTCTGCTCTTCTATGCATTCTGCATCTCCTTGCCAATCTTGTAGCTGAGGATCTTGTTCCAGTCGATCTTGGTGCGGGTGACGGGCAGCTGGCGGCGCAGGGCCTTGAAGGTGGTGTCAGACATAGTCTGGTAGTTCTCACTGATCGCCGTCTGGTAATCATTTTCAGCATTCTCAATGATATCCACAAACTCCTTGGCAGTCTGGCTCTCATTAGTCACCGTTATAGACTCCTCCACTTCCTTATGGCTGACCAACTGCACATTACCATCCTCATAGTAGTGCACCTGTATCTTCAACACACCCACTACATGAGCAGTAGACTGACCGATTGTGAACTTCCACTCTGACCTACAGCGCCCATTCCAGAAGTTTTTGGGTTGAAACTGGTGTCCCTCAATGCAGGCAATGATGGTTTGCTGGCCATCAACTGTTTTCCCATATACcgTGCAGACTCCGCTGGGGTAGTGCTCTTTAACGTATGCGCTGAGTGCAGTGTCGCAAGCCTCTCTCCAAGCTCTCAGGGAGCCGTCTCCATCGTATGGCTGCACATCGCTCACCTCCTTCCTCAGGTGGTCGAAGCGGAACGACACCCGGTTCCGAGGGTCCAGGAACCTCCCCTGACCCAGGTCCCCATGCTCTGTAATCAGAacCTGTTCATCATAGCCCTCAAGTTTGGCAGGGGTGAACTGATCCATGTTGTACTGGGCAAAAGCATGAGCCGCTCCCTCCCTGAGCAGGTTGTCATTGTTAAGGAGAAGCCGCACATCGTTGAAAACTTCGTTGAACTCTCCAGGGGGTGCATGGGTAACGAAGTTTGCTGCTATGCGGACCTTCTCCTCTTCTGATAGCGGCTCCTCAAAATCGGCCATCTTGGCTTGTTGTGTGACCCC

Function

symbol description
capza1 Enables cadherin binding activity. Involved in cell junction assembly. Located in extracellular exosome. Part of WASH complex.

NR:

description
F-actin-capping protein subunit alpha-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1600368 True 2086 lncRNA 0.46 10 65648396 65653934

Neighbor

gene id symbol gene type direction distance location
apeh apeh coding downstream 4255 65633130 ~ 65644141 (-)
tlr9 tlr9 coding downstream 19903 65623175 ~ 65628493 (-)
LOC110518541 LOC106566519 coding downstream 28104 65131650 ~ 65620292 (-)
wnt5a LOC106566524 coding downstream 518629 65094789 ~ 65129767 (-)
LOC110492545 lrtm1 coding downstream 656925 64984262 ~ 64991471 (-)
cttnbp2nlb cttnbp2nl coding upstream 6346 65660280 ~ 65704778 (-)
LOC110492562 LOC106568106 coding upstream 61777 65715711 ~ 65754610 (-)
ddx20 ddx20 coding upstream 615703 66269637 ~ 66276483 (-)
LOC110492566 LOC106566511 coding upstream 627022 66280956 ~ 66296439 (-)
b4galt3 b4galt3 coding upstream 649655 66303589 ~ 66308067 (-)
G1401611 NA non-coding downstream 31151 65616811 ~ 65617245 (-)
G1401606 NA non-coding downstream 43504 65604227 ~ 65604892 (-)
G1401596 NA non-coding downstream 71497 65576408 ~ 65576899 (-)
G1401587 NA non-coding downstream 93587 65553392 ~ 65554809 (-)
G1401574 NA non-coding downstream 130852 65517258 ~ 65517544 (-)
G1401378 NA non-coding upstream 683 65654617 ~ 65654855 (-)
G1401632 NA non-coding upstream 51813 65705747 ~ 65705961 (-)
G1401383 NA non-coding upstream 54691 65708625 ~ 65709149 (-)
G1401667 NA non-coding upstream 191403 65845337 ~ 65847509 (-)
G1401617 NA other downstream 12024 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1199924 64445355 ~ 64485638 (-)
G1400578 NA other downstream 1337940 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 1362403 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 1363849 64284207 ~ 64284547 (-)
G1402686 srpk3 other upstream 771617 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 830967 66484901 ~ 66494667 (-)
G1403498 NA other upstream 1789487 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 3137255 68791189 ~ 68795025 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location