XLOC_033004 (nipa2)


Basic Information

Item Value
gene id XLOC_033004
gene name nipa2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37733608 ~ 37745508 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064124
CAGCAATTGGCTTCCTAGTCGATGGACTCCATCCTGATCCCGtaccacaggagagggaaaataATTCCATTCCCATTTGTTTTGCAGTTGGCCAGGACTGTTCCTCTGGACTGAATCTTTTGTGCGTGTATGTCAATGTGACCAGAGGAAACTTAACCAACGGCACTATGGGTCAAGACAGAGGAAAATACGATTTTTATATAGGCCTGGCTTTGGCCATAAGCTCCAGTATATTTATTGGGGGTAGCTTCATCTTAAAGAAGAAAGGACTCCTTCGTCTGGCCAGAAAGGGCTCTATGCGGGCAGGGCAAGGAGGTCATGCATACTTAAAAGAATGGCTTTGGTGGGCCGGCCTGTTGTCAATGGGGGCCGGTGAAGCTGCCAATTTTGCTGCATATGCCTTCGCTCCCGCCACCCTCGTCACTCCCCTCGGCGCTCTCAGCGTGCTAGTCAGTGCGGTACTGTCTTCGTACTTCCTGACAGAGAGGTTAAACCTGCATGGGAAGCTGGGCTGTCTGCTCAGTATCCTGGGCTCAACTACCATGGTGATCCACGCACCTCAGGAGGAGGAGATCGACAGTCTCAAGGACATGGCCAAAAAACTGGTTGATCCAGGCTTTGTGGTGTTTGCGACAGCTGTCATCATCATAGCTCTCATATTCATCTTCGTATTGGGTCCTCGCCACGGCCAGACCAACATCCTGGTCTACATCACCATCTGCTCTGTGATTGGGGCCCTGTCCGTCTCCTGCGTCAAAGGATTGGGCATCGCGATTAAAGAGGCCATCGCTGGGAAGCCAGTGTTGCGAAACCCACTGGCCTGGCTGCTGCTTCTGAGCCTAATAGCTTGTGTTAGCACGCAGATCAACTACCTGAACAAAGCGCTGGACATCTTTAACACGTCTCTAGTGACGCCCATTTACTACGTGTTCTTCACCACCTCGGTGCTCTCCTGCTCTGCCATATTGTTCAAAGAATGGGAGCACATGGGCGTCGATGACATCATTGGCACCTTGAGTGGCTTTGTTACAATTATCGTGGGCATTTTCCTTCTGCATGCCTTTAAGGACGTTAGCATTAGCTTGGCGACTCTGGCTGTGTCCATCAGGAAGGACGAGAGGAATGGCCCTGTATCCAACGGCATGGCGGCTCACAACCACTCCAATTACGAGCTGCTACGTAATGAAGTCACAGAGGACTTTGAGGACCGAGAGCCCGGGTTGCCTTTCGACAGCGTTTCCAGAAGAAACGGCACCATGACGGTCTCTTAGGTTCAAGGAGGAACCCAGAGAAAATGTTTCAGCTGCTCTGTGGAcatttagtgtttttattttccttttaagATATGAAATAAAACCTAAGACAATCAACtctaaaagcaaaaaagaaaagaaagaaaaaacagatgGACCAATCGATTGTactaaaggttttgttttttgtttgttttgtttcagatTAGACTACATGGTATGCTTCATCTCATTCCTCATGTAGCACTGTAAATATACAACTGTACGTTTTTAAGAgacttttgttatattttatgtaCAGATATCTGTATTTACATGCACTGAGTTTCTTTCTACGAAATCGTAGTTGCTTTGAATTTGTAATAAAGTCATAAAAGGGTA
>TCONS_00064125
ATCGCTATGGTGTAGGAGGATCTGAACAGGCTCGCGTCAACATCGCGTCTGAATTCATGGTGGCGAGAAAAATGTGAAAGTCAAATCCTTGAAATCTCAGTGACCGGACAGAATGTCGAGCTGATTGCTGGAATACAGCTAGGTTTTGCAGTTGGCCAGGACTGTTCCTCTGGACTGAATCTTTTGTGCGTGTATGTCAATGTGACCAGAGGAAACTTAACCAACGGCACTATGGGTCAAGACAGAGGAAAATACGATTTTTATATAGGCCTGGCTTTGGCCATAAGCTCCAGTATATTTATTGGGGGTAGCTTCATCTTAAAGAAGAAAGGACTCCTTCGTCTGGCCAGAAAGGGCTCTATGCGGGCAGGGCAAGGAGGTCATGCATACTTAAAAGAATGGCTTTGGTGGGCCGGCCTGTTGTCAATGGGGGCCGGTGAAGCTGCCAATTTTGCTGCATATGCCTTCGCTCCCGCCACCCTCGTCACTCCCCTCGGCGCTCTCAGCGTGCTAGTCAGTGCGGTACTGTCTTCGTACTTCCTGACAGAGAGGTTAAACCTGCATGGGAAGCTGGGCTGTCTGCTCAGTATCCTGGGCTCAACTACCATGGTGATCCACGCACCTCAGGAGGAGGAGATCGACAGTCTCAAGGACATGGCCAAAAAACTGGTTGATCCAGGCTTTGTGGTGTTTGCGACAGCTGTCATCATCATAGCTCTCATATTCATCTTCGTATTGGGTCCTCGCCACGGCCAGACCAACATCCTGGTCTACATCACCATCTGCTCTGTGATTGGGGCCCTGTCCGTCTCCTGCGTCAAAGGATTGGGCATCGCGATTAAAGAGGCCATCGCTGGGAAGCCAGTGTTGCGAAACCCACTGGCCTGGCTGCTGCTTCTGAGCCTAATAGCTTGTGTTAGCACGCAGATCAACTACCTGAACAAAGCGCTGGACATCTTTAACACGTCTCTAGTGACGCCCATTTACTA
>TCONS_00064126
CTATTGTTCATCCTGTCGTGTCTTCATTCCTCGTCTGaacggtgtgtgtatgtgttgtcaTGAATGTAACCTCTGGTCTTATGAGCTGCAATGTGTGTGGTGTTGCCTCTAAAAATGGTTTTGCAGTTGGCCAGGACTGTTCCTCTGGACTGAATCTTTTGTGCGTGTATGTCAATGTGACCAGAGGAAACTTAACCAACGGCACTATGGGTCAAGACAGAGGAAAATACGATTTTTATATAGGCCTGGCTTTGGCCATAAGCTCCAGTATATTTATTGGGGGTAGCTTCATCTTAAAGAAGAAAGGACTCCTTCGTCTGGCCAGAAAGGGCTCTATGCGGGCAGGGCAAGGAGGTCATGCATACTTAAAAGAATGGCTTTGGTGGGCCGGCCTGTTGTCAATGGGGGCCGGTGAAGCTGCCAATTTTGCTGCATATGCCTTCGCTCCCGCCACCCTCGTCACTCCCCTCGGCGCTCTCAGCGTGCTAGTCAGTGCGGTACTGTCTTCGTACTTCCTGACAGAGAGGTTAAACCTGCATGGGAAGCTGGGCTGTCTGCTCAGTATCCTGGGCTCAACTACCATGGTGATCCACGCACCTCAGGAGGAGGAGATCGACAGTCTCAAGGACATGGCCAAAAAACTGGTTGATCCAGGCTTTGTGGTGTTTGCGACAGCTGTCATCATCATAGCTCTCATATTCATCTTCGTATTGGGTCCTCGCCACGGCCAGACCAACATCCTGGTCTACATCACCATCTGCTCTGTGATTGGGGCCCTGTCCGTCTCCTGCGTCAAAGGATTGGGCATCGCGATTAAAGAGGCCATCGCTGGGAAGCCAGTGTTGCGAAACCCACTGGCCTGGCTGCTGCTTCTGAGCCTAATAGCTTGTGTTAGCACGCAGATCAACTACCTGAACAAAGCGCTGGACATCTTTAACACGTCTCTAGTGACGCC
>TCONS_00064127
GTAGGAGGATCTGAACAGGCTCGCGTCAACATCGCGTCTGAATTCATGGTGGCGAGAAAAATGTGAAAGTCAAATCCTTGAAATCTCAGTGACCGGACAGAATGTCGAGCTGATTGCTGGAATACAGCTAGGTACTCTCAATGACTTCGTGACTTCCGTAAACCACGCGTGTGTTTTTGCTTTGAATTACGATGCTAATTGGCTAGGCTATCCGGCTGGGTTTGGCTGTATGAATAAGGTTTTGCAGTTGGCCAGGACTGTTCCTCTGGACTGAATCTTTTGTGCGTGTATGTCAATGTGACCAGAGGAAACTTAACCAACGGCACTATGGGTCAAGACAGAGGAAAATACGATTTTTATATAGGCCTGGCTTTGGCCATAAGCTCCAGTATATTTATTGGGGGTAGCTTCATCTTAAAGAAGAAAGGACTCCTTCGTCTGGCCAGAAAGGGCTCTATGCGGGCAGGGCAAGGAGGTCATGCATACTTAAAAGAATGGCTTTGGTGGGCCGGCCTGTTGTCAATGGGGGCCGGTGAAGCTGCCAATTTTGCTGCATATGCCTTCGCTCCCGCCACCCTCGTCACTCCCCTCGGCGCTCTCAGCGTGCTAGTCAGTGCGGTACTGTCTTCGTACTTCCTGACAGAGAGGTTAAACCTGCATGGGAAGCTGGGCTGTCTGCTCAGTATCCTGGGCTCAACTACCATGGTGATCCACGCACCTCAGGAGGAGGAGATCGACAGTCTCAAGGACATGGCCAAAAAACTGGTTGATCCAGGCTTTGTGGTGTTTGCGACAGCTGTCATCATCATAGCTCTCATATTCATCTTCGTATTGGGTCCTCGCCACGGCCAGACCAACATCCTGGTCTACATCACCATCTGCTCTGTGATTGGGGCCCTGTCCGTCTCCTGCGTCAAAGGATTGGGCATCGCGATTAAAGAGGCCATCGCTG

Function

symbol description
nipa2 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism. Orthologous to human NIPA2 (NIPA magnesium transporter 2).

GO:

id name namespace
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2134 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism. Orthologous to human NIPA2 (NIPA magnesium transporter 2).

Ensembl:

ensembl_id ENSDARG00000055912

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064124 False 1634 mRNA 0.47 6 37733608 37745508
TCONS_00064125 False 989 mRNA 0.51 6 37734317 37744441
TCONS_00064126 False 955 mRNA 0.51 6 37734326 37743724
TCONS_00064127 True 952 mRNA 0.51 6 37734450 37744430

Neighbor

gene id symbol gene type direction distance location
XLOC_033002 chst7 coding downstream 111032 37603968 ~ 37622576 (-)
XLOC_033003 BX322552.1 coding downstream 118125 37615366 ~ 37615483 (-)
XLOC_033001 rp2 coding downstream 207729 37513911 ~ 37525879 (-)
XLOC_033000 jade3 coding downstream 220475 37478765 ~ 37513133 (-)
XLOC_032999 plcxd1 coding downstream 263833 37460269 ~ 37469775 (-)
XLOC_033005 nipa1 coding upstream 211 37745719 ~ 37749711 (-)
XLOC_033006 CR407584.1 coding upstream 387003 38132511 ~ 38358080 (-)
XLOC_033007 gabra5 coding upstream 621428 38366936 ~ 38426942 (-)
XLOC_033008 CR628341.2 coding upstream 852161 38597669 ~ 38597784 (-)
XLOC_033009 NA coding upstream 1014038 38759546 ~ 38764326 (-)
XLOC_032997 BX324166.3 non-coding downstream 286465 37447028 ~ 37447143 (-)
XLOC_032996 BX324166.2 non-coding downstream 294238 37439255 ~ 37439370 (-)
XLOC_032992 NA non-coding downstream 389014 37342328 ~ 37344594 (-)
XLOC_032991 CT033823.2 non-coding downstream 963539 36769939 ~ 36770069 (-)
XLOC_033024 NA non-coding upstream 1746338 39491846 ~ 39521832 (-)
XLOC_033025 CU467856.1 non-coding upstream 1779416 39524924 ~ 39525505 (-)

Expression


Co-expression Network