G1401922 (ddx20)


Basic Information

Item Value
gene id G1401922
gene name ddx20
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66269703 ~ 66271309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1600974
CACGTAGTAAAGTCATTCATTTACCATGCAATAATATTAGCGTAAATCCACTATTTTACATTCAAAATTAAAGACCAAAACGTGTACAGCAAAATAACATTGTTACGTGGAAATCAGTGACTTCCTTAAAATAACTGAAGAAATGATTCATGTTTGTTCACCGTTTGCTGCTCCTACAAAGAGATCTTTAATGTTTTAACCATCTTTAACTTTGTTTGTTTCACTGATAACAGCAGACATTGAGTGGAAAGAATAGCTCATGTCTTTGGCAGAAGTTTAACTCAGTTTCTCTGGTCTACGTGTGAAGCCCTGTGTTAGTGTTTTAACAGTTCCTCCATGTACACAGAGTTCATACGGTAGGCAGCCATCCAGCTGGACGccatactgtggtagccatggtaACCCTGGTGGTGAGAGGGGGGCATGGAGGCGTAGTAATCCTCCCAAGCTCTGTAGTAGGCCCTCCAGTAGCCCTCATAACCCTCACCATCATCCTCCTCCTGCTCTACCTCActcactctgtccctcttcctctcactccctcgATTCTCAggcatcttcctctcctctaaaatatctctcttctcccctttgACTTTCTTAGCCGTCTCCCTACTCCACTGCTGTGCTGTAGCCTCTCTGCCCTTTGCCTTCCACAACAAAGGTTCCCCCTCCCCGGGGTTTGTACTCACAGCTCTCCCCTCTGGTCTGGGGGATCTGTGGTGGCTAGGATGGGGTACAGACGGTGAGTTGGGTTGGCTTCTAGGTGGCGTACACTTTGGTTTCCTTGCCCCATCCATGACTGTGGATTGCTGTGCAGATTGAGTTTGAATCGGAACGATTGGTTTGTGTTCAGCTCCTCTGGTCTGATCTGTGGAGCTCTGCGTTGACTCGTCAGCCTGCCGGTCTTCCTCCATGTCACAGTCAGAGCTGGACCCATCAGAAGTCGACTCCGAAGGTGACGGGTCAGAGTTCGTCTTTAGAAGCAGCTGTGTGGGTGTTGGTGGACGCTCTCCGTTCcgtgtcatgtgtgtgtgtgtgagtggcacATCGTCATCCTGGAGTGTATGAGACTCCTCGTAGCCGTGCTGACCGTTAAATCCCTCGCCGTCGTCTCCGTGACCTCTGAACTGTCGGATGACCTCCACGgtccttcccagcccctccctgATGAAGCTCTGGAAGTCCAGCTCTGCCTCCTGGAAGGTCATGATCCCTGACCTTTGACTCTTGAAGGCGCTGAGCGGAGGGATCTTTGGCAGGGCATCCTGTTGCTCTTTACGGGAGAGAGCTAGGGAGGGGGTAGGAGGACATCCAGGGCAGGGGATGCATTTTTGTGCTTCAGACCAGCCTTAGCCACAGGACTGGCTGTGTGCTGGCTCTTACATGGTCGGCTGGGTTCAGTGCTCTCTGGGTGGACAGGGCTGGGGTCCTGATCCCTGATGGGTTTAGGGGCTGGGGATTCGGTCTTAGCCCGTCTCCTTCGCTCTGTCTTGGGGAACACCTGGGAATTTGTCCCTGGTGTCAGGGCCTCCACAGTGATATCCCAGTCACAGGGCTCCTGCATCAGCCCTGGCTC

Function

symbol description
ddx20 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol. Predicted to be part of SMN complex. Orthologous to human DDX20 (DEAD-box helicase 20).

NR:

description
probable ATP-dependent RNA helicase DDX20 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1600974 True 1579 lncRNA 0.52 2 66269703 66271309

Neighbor

gene id symbol gene type direction distance location
LOC110492564 LOC102303593 coding upstream 4604 65996027 ~ 66267216 (+)
capza1b capza1 coding upstream 615766 65648356 ~ 65653937 (+)
cacna2d3a LOC102307471 coding upstream 1233420 64722542 ~ 65037527 (+)
LOC110492553 LOC106566530 coding upstream 1595871 64670768 ~ 64673832 (+)
LOC100136613 LOC106566534 coding upstream 1624522 64630443 ~ 64645181 (+)
srpk3 srpk3 coding downstream 152580 66423889 ~ 66434911 (+)
comta LOC106566505 coding downstream 205968 66477277 ~ 66494685 (+)
grm6a LOC106566502 coding downstream 253427 66524736 ~ 66565764 (+)
usp11 usp11 coding downstream 298167 66569476 ~ 66582944 (+)
uxt uxt coding downstream 326328 66597637 ~ 66599559 (+)
G1401857 NA non-coding upstream 122849 66146439 ~ 66146854 (+)
G1401856 NA non-coding upstream 123581 66145824 ~ 66146122 (+)
G1401855 NA non-coding upstream 124765 66144733 ~ 66144938 (+)
G1401843 NA non-coding upstream 134460 66125068 ~ 66135243 (+)
G1401923 ddx20 non-coding downstream 2056 66273365 ~ 66274218 (+)
G1401931 LOC106566511 non-coding downstream 12587 66283896 ~ 66284444 (+)
G1401952 NA non-coding downstream 41896 66313205 ~ 66313546 (+)
G1401946 NA non-coding downstream 49115 66320424 ~ 66322588 (+)
G1401993 NA non-coding downstream 122587 66393896 ~ 66394286 (+)
G1401782 NA other upstream 245458 66019001 ~ 66024245 (+)
G1401354 NA other upstream 372640 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1010859 65258515 ~ 65258844 (+)
G1401041 NA other upstream 1079428 65189990 ~ 65190275 (+)
G1400202 LOC106566541 other upstream 1795415 64473548 ~ 64476421 (+)
G1402066 NA other downstream 272002 66543311 ~ 66543685 (+)
G1402256 NA other downstream 643056 66914365 ~ 66914716 (+)
LOC110492593 LOC105017353 other downstream 1200635 67459278 ~ 67476876 (+)
G1403412 LOC106566473 other downstream 1381759 67653068 ~ 67653447 (+)
G1403463 NA other downstream 1467653 67738962 ~ 67739702 (+)

Expression


Co-expression Network