XLOC_033006 (CR407584.1)


Basic Information

Item Value
gene id XLOC_033006
gene name CR407584.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38132511 ~ 38358080 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064130
ATGACCACCAAATTGTTCCTCTACTTCTTACTTCTGTCAGTGTTTCGAGCATGttctcCAACATTTGCTTCTGATGATGATGAGTATGACGACGTTACTGTGAATCAAATGTTGGCCCCCAAAACCCACGAGACAGATGCAACGCAAAtactaaacaacttattaaagGAGTATGACAAAAAACTGCGCCCGGATATTGGAGTTAAACCGACAGTCATTGATGTCGACATCTACGTAAATAGCATTGGACCAGTGTCATCTATAAATATGgaATACCAGATTGACATCATTTTTGCGCAGACATGGACAGATAGCCGGCTCAGATATAACAGCACTATGAAAATATTGACTTTAAACAGTAACATGGTTGGACTCATTTGGTTACCGGATACCATCTTCAGAAATTCTAAGAGTGCAGATTCACATTGGATTACTACGCCAAATCAGCTGCTCAGAATATGGAATGATGGGAAAATACTTTACACTTTGAGATTGACTATTAATGCAGAGTGCCAGCTTCAGCTTCATAACTTTCCCATGGATGAACACTCCTGCCCCCTCATCTTTTCCAGCTATGGATACCCACGAGATGAAATGATTTACAAGTGGAGGAGGAACTCGGTGCAGGCGGCCGATCAGAAGTCGTGGAGGCTTTACCAGTTTGACTTCATGGGCCTGAGGAACACCACTGATGTTATCAAGACGACCGCAGgtGACTATGTGGTGATGACTGTATATTTTGACCTTAGTAGAAGAATGGGATACTTCACAATTCAGACCTATATCCCTTGCATATTGACTGTGGTTCTTTCCTGGGTCTCCTTCTGGATAAAAAAGGATGCAACACCAGCTAGAACAGCACTAGTTTCCTGCTTTAAGTCCATGTCCTGTCCTGGTAAATGTCACTGTTGTCAAgGAATAACAACGGTATTAACCATGACTACTCTCAGCACGGTGGCTCGGACATCGCTGCCCAGGGTCTCATATGTCACAGCGATGGACCTGTTCGTCACTGTCTGCTTCTTGTTTGTTTTCGCGGCTCTCATGGAGTATGCCACACTCAATTATTACTCCTACAGCGCCCGCAGACCAACCTGCAACAAGACCAAACGATCGAACTACTCGGTACTGGACGTGGGTCCTCCTCCCACTGTTATCACTCTCAACAACTCCATGTACTGGCAGGAGTTTGACGATGCCTGCGTTTATGAGTGCCTGGACGGAAAAGACTGCCAGAGTTTCTTCTGCTGCTACGAGGAGTGCAAAGATGGAGCGTGGCGAAAGGGCCGTGTGCATATAGACATCCTGGAACTCGATGCATACTCTCGTGTCTTCTTTCCCACCTCTTTCCTATTGTTCAATGTTGTCTACTGGGTAGGCTACTTGTATCTTTAG
>TCONS_00065196
GACGTAATTTGAAGAAACTAAAGGACGCGTACGAGGTTTGAAGGTGTCCACTTTGGAAGTTTGCGCTCTGCCTCTGTGTGAACGTCAGTATGTGTATCTGGTGGTGCAATCGAAGGCAGCGCAACTTCAAGGAGCAGGAGGGGCTCTTCTATTATTTGATCCCGTTAATTGGCAATGTAAGTGAACTTTAAGCACCGGACACTAGCCGAGGAGGTCTTGTCGTTCCCGTTGGACTATAACCTAGACTGCTCGCCACTGTTTGAACTGAGCCTGGAAGAAAAGGCTGCAGCTGTGTCACTTTTTTCCTTCTTTGAAGAGTCTCCGTGCGGTGTGCCACATTCAACAAGGAGACAGTCTCACCTAAAACATGACCACCAAATTGTTCCTCTACTTCTTACTTCTGTCAGTGTTTCGAGCATGttctcCAACATTTGCTTCTGATGATGATGAGTATGACGACGTTACTGTGAATCAAATGTTGGCCCCCAAAACCCACGAGACAGATGCAACGCAAAtactaaacaacttattaaagGAGTATGACAAAAAACTGCGCCCGGATATTGGAGTTAAACCGACAGTCATTGATGTCGACATCTACGTAAATAGCATTGGACCAGTGTCATCTATAAATATGgaATACCAGATTGACATCATTTTTGCGCAGACATGGACAGATAGCCGGCTCAGATATAACAGCACTATGAAAATATTGACTTTAAACAGTAACATGGTTGGACTCATTTGGTTACCGGATACCATCTTCAGAAATTCTAAGAGTGCAGATTCACATTGGATTACTACGCCAAATCAGCTGCTCAGAATATGGAATGATGGGAAAATACTTTACACTTTGAGATTGACTATTAATGCAGAGTGCCAGCTTCAGCTTCATAACTTTCCCATGGATGAACACTCCTGCCCCCTCATCTTTTCCAGCTATGGATACCCACGAGATGAAATGATTTACAAGTGGAGGAGGAACTCGGTGCAGGCGGCCGATCAGAAGTCGTGGAGGCTTTACCAGTTTGACTTCATGGGCCTGAGGAACACCACTGATGTTATCAAGACGACCGCAGgtGACTATGTGGTGATGACTGTATATTTTGACCTTAGTAGAAGAATGGGATACTTCACAATTCAGACCTATATCCCTTGCATATTGACTGTGGTTCTTTCCTGGGTCTCCTTCTGGATAAAAAAGGATGCAACACCAGCTAGAACAGCACTAGGAATAACAACGGTATTAACCATGACTACTCTCAGCACGGTGGCTCGGACATCGCTGCCCAGGGTCTCATATGTCACAGCGATGGACCTGTTCGTCACTGTCTGCTTCTTGTTTGTTTTCGCGGCTCTCATGGAGTATGCCACACTCAATTATTACTCCTACAGCGCCCGCAGACCAACCTGCAACAAGACCAAACGATCGAACTACTCGGTACTGGACGTGGGTCCTCCTCCCACTGTTATCACTCTCAACAACTCCATGTACTGGCAGGAGTTTGACGATGCCTGCGTTTATGAGTGCCTGGACGGAAAAGACTGCCAGAGTTTCTTCTGCTGCTACGAGGAGTGCAAAGATGGAGCGTGGCGAAAGGGCCGTGTGCATATAGACATCCTGGAACTCGATGCATACTCTCGTGTCTTCTTTCCCACCTCTTTCCTATTGTTCAATGTTGTCTACTGGGTAGGCTACTTGTATCTTTAG
>TCONS_00064131
GACGTAATTTGAAGAAACTAAAGGACGCGTACGAGGTTTGAAGGTGTCCACTTTGGAAGTTTGCGCTCTGCCTCTGTGTGAACGTCAGTATGTGTATCTGGTGGTGCAATCGAAGGCAGCGCAACTTCAAGGAGCAGGAGGGGCTCTTCTATTATTTGATCCCGTTAATTGGCAATGTAAGTGAACTTTAAGCACCGGACACTAGCCGAGGAGGTCTTGTCGTTCCCGTTGGACTATAACCTAGACTGCTCGCCACTGTTTGAACTGAGCCTGGAAGAAAAGGCTGCAGCTGTGTCACTTTTTTCCTTCTTTGAAGAGTCTCCGTGCGGTGTGCCACATTCAACAAGGAGACAGTCTCACCTAAAACATGACCACCAAATTGTTCCTCTACTTCTTACTTCTGTCAGTGTTTCGAGCATGttctcCAACATTTGCTTCTGATGATGATGAGTATGACGACGTTACTGTGAATCAAATGTTGGCCCCCAAAACCCACGAGACAGATGCAACGCAAAtactaaacaacttattaaagGAGTATGACAAAAAACTGCGCCCGGATATTGGAGGTGAGTGCTTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099919

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064130 False 1395 processed_transcript 0.45 10 38132511 38357713
TCONS_00065196 False 1711 lncRNA 0.46 9 38132511 38358080
TCONS_00064131 True 580 processed_transcript 0.46 2 38355762 38358080

Neighbor

gene id symbol gene type direction distance location
XLOC_033005 nipa1 coding downstream 382800 37745719 ~ 37749711 (-)
XLOC_033004 nipa2 coding downstream 387003 37733608 ~ 37745508 (-)
XLOC_033002 chst7 coding downstream 509935 37603968 ~ 37622576 (-)
XLOC_033003 BX322552.1 coding downstream 517028 37615366 ~ 37615483 (-)
XLOC_033001 rp2 coding downstream 606632 37513911 ~ 37525879 (-)
XLOC_033007 gabra5 coding upstream 8856 38366936 ~ 38426942 (-)
XLOC_033008 CR628341.2 coding upstream 239589 38597669 ~ 38597784 (-)
XLOC_033009 NA coding upstream 401466 38759546 ~ 38764326 (-)
XLOC_033010 cnga3a coding upstream 433820 38791900 ~ 38818582 (-)
XLOC_033011 hdac7b coding upstream 546967 38905047 ~ 38930726 (-)
XLOC_032997 BX324166.3 non-coding downstream 685368 37447028 ~ 37447143 (-)
XLOC_032996 BX324166.2 non-coding downstream 693141 37439255 ~ 37439370 (-)
XLOC_032992 NA non-coding downstream 787917 37342328 ~ 37344594 (-)
XLOC_032991 CT033823.2 non-coding downstream 1362442 36769939 ~ 36770069 (-)
XLOC_033024 NA non-coding upstream 1133766 39491846 ~ 39521832 (-)
XLOC_033025 CU467856.1 non-coding upstream 1166844 39524924 ~ 39525505 (-)
XLOC_033038 NA non-coding upstream 1680612 40038692 ~ 40044111 (-)

Expression


Co-expression Network