G1402620


Basic Information

Item Value
gene id G1402620
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66299646 ~ 66301517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1601814
TAATTTGAATGTATTTAATTTATTAAACTACTGTTAGGATTTGGGTTTTACCCGTTAAGCTTACTTACAGCAGTGAGTATTAACTCATTCCATAGCATCAACAATGCCTCATATCAGAATGTAGACCAGCCTTTTAGCGTGAAAGAAAGGGTGGTTAATATTATCCATGTAGTTGTCATGGTTACTAGCACTGTGCTGAACTTATATGACGGACTTAAAGTTCCCGAACTTGCAGATACTGTAGAAATTAGATTTAGAATGGAAACAATTGAATCTTTATCAGGTAGAACAGCTGATTTGATATATTCTATATTTCTATTTCTGTCTTCTACATTCTAAACATTATGCCTCAATAAGCCCTGTGTTTTAAAGAATGGAATGCTgtaggcaaccctgttcctggagtacCACAGGTACTGCAGGGTTTTGTTCCAACTAGTCACCACACATGACCAACTGAGCCATGCagcactccaggaccagggtttccTACCCCTGCTGTaggctatgtactgtatgtgtctgattCAGTGTACAGCATATCATGCATATATGCCCTCTTGCAGTCTGAAGCTGTCTGGGAGAGAGCTTTACTTTTttacggccgtgattgggagtcccatagggcggcgcacaattggcccagcgtcgtccgtgttagggtttggccggggtaggccatcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaataaaaatatatatatatatatagaaaaacattacCTGGGTGCTTTCTAATAGAGGGAGGGCGGGTATGGGAATCAAGGCCTCTGACTGTACAATAGGAATATTAATCAATACTGTCGATCATTATCTGCACCTTGTACCCAATTAAATCTTTACAATGAGGATGATGAAATGCCACCCCCATCTTTGAGGTCACCTTTTCAACTCGTGTGTGAGATATTTTAGAGAAAGAGAATAGTATTTTGACTTTAGATTCACTACACAGGTGGCATACCAGTGAAACTACTGTATACCCACTGTAACCATACACTacttgatggtggtggtgataatGGCGATGGTGATGATGCCATCCACTATTAATCAATTGTAAGTGATCATCCATAGGATATATCTGCAGTCATATTAACACAGCTCTTCATAGGGACATAACCGACTAGTATGTATCATAGGAGACAGTGTGTACCTGGAAATCATTCTATATTTAATAAAATAGCTAGTTTTCTATCAGATGTTTGGTGTAAATGGAGGGGAAATAGTATAGACTACTATAGGCAATCTATTGTAACTTTAATGTAGTCACATGCTTTTGACTTTTATTTCTAAAACATGCTTTTGACTTTTATTTCTAAAACATGCTTTTGACTTTTATTTCTAAAACATGCTTTTGACTTTTATTTCTAAAACATGCTTTTGACTTTTTCAATCATGATCAGTTCGGTGTGTTGATTTCCATACCGATAGCtgtggtaacatactgtattgaaAAGTGTTAGAATATTATTGTATTTTTAGGGGGATATGAATTATATCATTTGGACTGGGAGTTTAATGGAAGGTTATGACATGTGCTTTAGTCACTGTATTGAGTTTCTAACCTGATTTCCACCTTCAGATGAAAATTGACTATCATATTTAGAGGAAGTGGACACTCTGCTGGGCTGGGTTGTGTttgggagtgagagggggagataaGGAGAGACCAGTGGAGAGGCCAGCAGAGATGGCACCCTAGAGAGATTGGGGGTTATTCTTTGGGCCATGTTGTGGAGTGTTGTGTTTCATGACTACACAGAGAAAACATACCAATAAAACACATTCAAAAGCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1601814 True 1843 lncRNA 0.38 2 66299646 66301517

Neighbor

gene id symbol gene type direction distance location
LOC110492566 LOC106566511 coding downstream 3207 66280956 ~ 66296439 (-)
ddx20 ddx20 coding downstream 23163 66269637 ~ 66276483 (-)
LOC110492562 LOC106568106 coding downstream 558870 65715711 ~ 65754610 (-)
cttnbp2nlb cttnbp2nl coding downstream 594868 65660280 ~ 65704778 (-)
apeh apeh coding downstream 655505 65633130 ~ 65644141 (-)
b4galt3 b4galt3 coding upstream 2072 66303589 ~ 66308067 (-)
bgnb bgn coding upstream 18905 66320422 ~ 66345643 (-)
si:dkey-32e6.6 LOC106566508 coding upstream 80486 66382003 ~ 66421064 (-)
tsr2 tsr2 coding upstream 132431 66433948 ~ 66436902 (-)
cdk16 cdk16 coding upstream 149575 66442214 ~ 66479142 (-)
G1402588 NA non-coding downstream 93406 66205628 ~ 66206240 (-)
G1402585 NA non-coding downstream 98143 66201159 ~ 66201503 (-)
G1402550 NA non-coding downstream 150672 66148637 ~ 66148974 (-)
G1402492 NA non-coding downstream 254246 66045024 ~ 66045400 (-)
G1402485 NA non-coding downstream 263762 66035339 ~ 66035884 (-)
G1402659 NA non-coding upstream 57924 66359441 ~ 66376840 (-)
G1402707 LOC106566505 non-coding upstream 189140 66484901 ~ 66494667 (-)
G1402728 NA non-coding upstream 223209 66524726 ~ 66525092 (-)
G1402731 LOC106566502 non-coding upstream 229839 66531356 ~ 66531965 (-)
G1401617 NA other downstream 663274 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 1851174 64445355 ~ 64485638 (-)
G1400578 NA other downstream 1989190 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 2013653 64285628 ~ 64285993 (-)
G1402686 srpk3 other upstream 124034 66425551 ~ 66426322 (-)
G1403498 NA other upstream 1141904 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2489672 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2901769 69203286 ~ 69207158 (-)

Expression


Co-expression Network