G1401946


Basic Information

Item Value
gene id G1401946
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66320424 ~ 66322588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1601019
ATGTTGTAGTTGTCTTTTATTTCTCACACAGCTTCTTTCCACCACCATACCATCACACGTTCTCTCTGCTATAGTCAGGCTGAAAAAAATCTTTATTCTTACATGCAGCGGTAGCTTGGCAGAGTATAGAAAAGGCATTAAGAACTAAGGCAACTACATCTATCATTTACACAGACTAAATACCCAGAGGAAACCCAGCAGAGAAAGCATTACAGAGACACTGTGCAAAACAATCCATCAAACACTGCTGTTATAACCTCCCTGACTGCAGCCTCTGCCAAGAGGTCTGGACCTGCAGGGTTGCTGGTTCAAGTCCCACTCTGGCGGTTCACCCCTTATTGTACTGTCACTGTATACACTCAGGAGACCTATTGCTTAAGTGGGGATGGACACAAAATGGCACCCAGGAAGAATCGGATCCAGGGCAGTTTCCCCTGGGGAGTAGCCTACCTAATTGAGACTGACATCTCCAGGTTGAGGTCAGTTCCACTTGTGATTCAGAGGTATCAAATCAAAGGAATAAGAAATCTATGTTTTTGTTTGGATTTGTGATGTATTGGAACTGACAACTTCCGTTTTGGAATCTGATTTGAAATAGTGGAATTGACTCCAACCTTAAACTTTTTCTTTCCATAGGTTGGGTTTGCTTATGACATACAGTACAAATTGATTATGGCATCCAAGTTAGCACCTGATAAGTCTGATGTTAGCAATAGAAGGAAGGTTCAAATGTGACTCCCAAATAGATACACAACAAACATATGTAAAAAGAGCACCTCTTATATGATCATCTATAAACAGGCATTGCTTTTCTATATTTTACCTGTAATGTATCTTCACCAAAATTATAATAACACAAAAAGtgtaataataacaaataaagcTATCTTGTAATAAAAACAATATTGAAGGAAATGCTTCAAAATATTTCTTATCATATATCTCATCTTTGCAATTTGGTTGGGGAAAAAAACATcctcaaaaaaatatatttctgagTACTGATTAATTTGACACAAACAcaatagtatttatttatttatattgaccCTGTTTTCAGGCTTTAATACCTGATTATTAAAAGCATGGTTTAAAAAAAGACATATATTGAAATGTGGATAGGGCAAGCACATCCTTCCCTTTCTATTCCCCTCAcactgtatgtttctctcctACAATCAGGAATTAGAATACAGGATCTATATGGTTAGAATCAGGAATTAGAATATACGATCTCTATGGTTAGAATCTGGAATTAGAATACAGGATCTCTATGGTTAGAATCTGGAATTAGAATACAGGATCTCTATGGTTAGAATCAGGAATTAGAATACAGGATCTCTATGGTTAGAGTCAGGAATTAGAATACAGGATCTCTATGGTTAGAATCAGGAATTAGAATACAGGATCTCTATGGTTAGAGTCAGGAATTAGAATACAGGATCTCTATGGTTAGAATCAGGAATTAGAATACAGGATCTCTATGGTTAGAGTCAGGAATTAGAATACAGGATCTCTACGGTTAGAACTGTAATTAGAATACAGGATCTATATGGTTAGAATCAGGAATTAGAATACAGGATCTCTATGGTTGGAACCGGAATTAGAATACAGGATCTCTATAGTTGGAATTAGAATGCAAACACATCTCTATTGTTTATTTTCTCTCATCTGTCCTCAccatctctcgttctctctatcgAATACAGATTTAAATTTGGTCAGGGCAATTTTACTCATCTCCTTTCCCCAATTCTGGTCTctgcctccttctctcctcaacctcctcctctccccagtcctcttctctcactcctccTTCCATCCTCTCTATCACTTTCTCCCTGTGCTTATTTCTTGTAGTTGCCAAACTGGATGGCCAGACGGTCACTGACACAGCGGAAGGCAGCGGGTTGGACCTCCCAGTAGTTGACAGGGTTGGAGTAGAGGCTGATGCCATTATAGAACGACCTCTTCATCCCAAAGCCTCTTGGGCAGAAGTCATCCACTCCCACCTTGCTGATGCTGTTGGAATGGAGGTAAACCACCTACATGGTGGGAGGGGGACCACATGGTGTTGTAATAGAGGTGCTTCAAGGCCCTTAACCTGTCTGATGAATACAACTCTACc
>TU1601023
ATGTTGTAGTTGTCTTTTATTTCTCACACAGCTTCTTTCCACCACCATACCATCACACGTTCTCTCTGCTATAGTCAGGCTGAAAAAAATCTTTATTCTTACATGCAGCGGTAGCTTGGCAGAGTATAGAAAAGGCATTAAGAACTAAGGCAACTACATCTATCATTTACACAGACTAAATACCCAGAGGAAACCCAGCAGAGAAAGCATTACAGAGACACTGTGCAAAACAATCCATCAAACACTGCTGTTATAACCTCCCTGACTGCAGCCTCTGCCAAGAGGTCTGGACCTGCAGGGTTGCTGGTTCAAGTCCCACTCTGGCGGTTCACCCCTTATTGTACTGTCACTGTATACACTCAGGAGACCTATTGCTTAAGTGGGGATGGACACAAAATGGCACCCAGGAAGAATCGGATCCAGGGCAGTTTCCCCTGGGGAGTAGCCTACCTAATTGAGACTGACATCTCCAGGTTGAGGTCAGTTCCACTTGTGATTCAGAGGTATCAAATCAAAGGAATAAGAAATCTATGTTTTTGTTTGGATTTGTGATGTATTGGAACTGACAACTTCCGTTTTGGAATCTGATTTGAAATAGTGGAATTGACTCCAACCTTAAACTTTTTCTTTCCATAGGTTGGGTTTGCTTATGACATACAGTACAAATTGATTATGGCATCCAAGTTAGCACCTGATAAGTCTGATGTTAGCAATAGAAGGAAGGTTCAAATGTGACTCCCAAATAGATACACAACAAACATATGTAAAAAGAGCACCTCTTATATGATCATCTATAAACAGGCATTGCTTTTCTATATTTTACCTGTAATGTATCTTCACCAAAATTATAATAACACAAAAAGtgtaataataacaaataaagcTATCTTGTAATAAAAACAATATTGAAGGAAATGCTTCAAAATATTTCTTATCATATATCTCATCTTTGCAATTTGGTTGGGGAAAAAAACATcctcaaaaaaatatatttctgagTACTGATTAATTTGACACAAACAcaatagtatttatttatttatattgaccCTGTTTTCAGGCTTTAATACCTGATTATTAAAAGCATGGTTTAAAAAAAGACATATATTGAAATGTGGATAGGGCAAGCACATCCTTCCCTTTCTATTCCCCTCAcactgtatgtttctctcctACAATCAGGAATTAGAATACAGGATCTATATGGTTAGAATCAGGAATTAGAATATACGATCTCTATGGTTAGAATCTGGAATTAGAATACAGGATCTCTATGGTTAGAATCAGGAATTAGAATACAGGATCTCTATGGTTAGAATCAGGAATTAGAATACAGGATCTCTATGGTTAGAGTCAGGAATTAGAATACAGGATCTCTACGGTTAGAACTGTAATTAGAATACAGGATCTATATGGTTAGAATCAGGAATTAGAATACAGGATCTCTATGGTTAGAGTCAGGAATTAGAATACAGGATCTCTACGGTTAGAACTGTAATTAGAATACAGGATCTATATGGTTAGAATCAGGAATTAGAATACAGGATCTCTATGGTTGGAACCGGAATTAGAATACAGGATCTCTATAGTTGGAATTAGAATGCAAACACATCTCTATTGTTTATTTTCTCTCATCTGTCCTCAccatctctcgttctctctatcgAATACAGATTTAAATTTGGTCAGGGCAATTTTACTCATCTCCTTTCCCCAATTCTGGTCTctgcctccttctctcctcaacctcctcctctccccagtcctcttctctcactcctccTTCCATCCTCTCTATCACTTTCTCCCTGTGCTTATTTCTTGTAGTTGCCAAACTGGATGGCCAGACGGTCACTGACACAGCGGAAGGCAGCGGGTTGGACCTCCCAGTAGTTGACAGGGTTGGAGTAGAGGCTGATGCCATTATAGAACGACCTCTTCATCCCAAAGCCTCTTGGGCAGAAGTCATCCACTCCCACCTTGCTGATGCTGTTGGAATGGAGGTAAACCACCTACATGGTGGGAGGGGGACCACATGGTGTTGTAATAGAGGTGCTTCAAGGCCCTTAACCTGTCTGATGAATACAACTCTACc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1601019 False 2131 lncRNA 0.39 2 66320424 66322588
TU1601023 True 2095 lncRNA 0.39 2 66320424 66322588

Neighbor

gene id symbol gene type direction distance location
LOC110492564 LOC102303593 coding upstream 55325 65996027 ~ 66267216 (+)
capza1b capza1 coding upstream 666487 65648356 ~ 65653937 (+)
cacna2d3a LOC102307471 coding upstream 1284141 64722542 ~ 65037527 (+)
LOC110492553 LOC106566530 coding upstream 1646592 64670768 ~ 64673832 (+)
LOC100136613 LOC106566534 coding upstream 1675243 64630443 ~ 64645181 (+)
srpk3 srpk3 coding downstream 101301 66423889 ~ 66434911 (+)
comta LOC106566505 coding downstream 154689 66477277 ~ 66494685 (+)
grm6a LOC106566502 coding downstream 202148 66524736 ~ 66565764 (+)
usp11 usp11 coding downstream 246888 66569476 ~ 66582944 (+)
uxt uxt coding downstream 275049 66597637 ~ 66599559 (+)
G1401913 NA non-coding upstream 2715 66234253 ~ 66317709 (+)
G1401952 NA non-coding upstream 6878 66313205 ~ 66313546 (+)
G1401931 LOC106566511 non-coding upstream 35980 66283896 ~ 66284444 (+)
G1401923 ddx20 non-coding upstream 46206 66273365 ~ 66274218 (+)
G1401922 ddx20 non-coding upstream 49115 66269703 ~ 66271309 (+)
G1401993 NA non-coding downstream 71308 66393896 ~ 66394286 (+)
G1402026 NA non-coding downstream 126159 66448747 ~ 66454922 (+)
G1402054 NA non-coding downstream 192204 66514792 ~ 66517699 (+)
G1402063 NA non-coding downstream 216576 66539164 ~ 66539571 (+)
G1402067 NA non-coding downstream 221461 66544049 ~ 66544384 (+)
G1401782 NA other upstream 296179 66019001 ~ 66024245 (+)
G1401354 NA other upstream 423361 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1061580 65258515 ~ 65258844 (+)
G1401041 NA other upstream 1130149 65189990 ~ 65190275 (+)
G1400202 LOC106566541 other upstream 1846136 64473548 ~ 64476421 (+)
G1402066 NA other downstream 220723 66543311 ~ 66543685 (+)
G1402256 NA other downstream 591777 66914365 ~ 66914716 (+)
LOC110492593 LOC105017353 other downstream 1149356 67459278 ~ 67476876 (+)
G1403412 LOC106566473 other downstream 1330480 67653068 ~ 67653447 (+)
G1403463 NA other downstream 1416374 67738962 ~ 67739702 (+)

Expression


Co-expression Network