G1402054


Basic Information

Item Value
gene id G1402054
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66514792 ~ 66517699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1601168
atttctttccttcttaatgcatttgagccaatcagttgtgttgtgacaaggcaggggtgtcaaagtcaaatggacggagggccaaataaaaaaatcagctacaagacgagggccggactgttcgaatgttcattgaaaaatttttaaatgacgcatatagtctagtgaacctaattgaacctactgaaaacctaacaaatatattacaatatgatcagataaataaagcaatattttcttatggctctgtcagtaatctttaattttcaacagacacaaaagacaaatttcctttatataaatatccccataacatgaacattaaatgaaagaaaccggtattcaag
>TU1601169
atttctttccttcttaatgcatttgagccaatcagttgtgttgtgacaaggtgggggtggaatacggaagatagccctatttggtaaactaccaaatccatattatggaaagaacagctcaaataagcaaagagaaacaacagtccatcattactttaagGCATGCAGGTCAGTCAATgtgaaaaatgtcaagaactttgcaggtttcttcaagtgcagtcacaaaatctatcaagccctatgatgaaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1601168 False 347 lncRNA 0.33 2 66514792 66515248
TU1601169 True 250 lncRNA 0.38 2 66514792 66517699

Neighbor

gene id symbol gene type direction distance location
comta LOC106566505 coding upstream 20107 66477277 ~ 66494685 (+)
srpk3 srpk3 coding upstream 79881 66423889 ~ 66434911 (+)
LOC110492564 LOC102303593 coding upstream 249693 65996027 ~ 66267216 (+)
capza1b capza1 coding upstream 860855 65648356 ~ 65653937 (+)
cacna2d3a LOC102307471 coding upstream 1478509 64722542 ~ 65037527 (+)
grm6a LOC106566502 coding downstream 7037 66524736 ~ 66565764 (+)
usp11 usp11 coding downstream 51777 66569476 ~ 66582944 (+)
uxt uxt coding downstream 79938 66597637 ~ 66599559 (+)
elk1 LOC106566498 coding downstream 82263 66599962 ~ 66621991 (+)
si:ch211-180f4.1 LOC106566497 coding downstream 122534 66640233 ~ 66653854 (+)
G1402026 NA non-coding upstream 59870 66448747 ~ 66454922 (+)
G1401993 NA non-coding upstream 120506 66393896 ~ 66394286 (+)
G1401946 NA non-coding upstream 192204 66320424 ~ 66322588 (+)
G1401952 NA non-coding upstream 201246 66313205 ~ 66313546 (+)
G1401931 LOC106566511 non-coding upstream 230348 66283896 ~ 66284444 (+)
G1402063 NA non-coding downstream 21465 66539164 ~ 66539571 (+)
G1402067 NA non-coding downstream 26350 66544049 ~ 66544384 (+)
G1402092 NA non-coding downstream 77868 66595567 ~ 66596205 (+)
G1402098 NA non-coding downstream 109865 66627564 ~ 66627883 (+)
G1401782 NA other upstream 490547 66019001 ~ 66024245 (+)
G1401354 NA other upstream 617729 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1255948 65258515 ~ 65258844 (+)
G1401041 NA other upstream 1324517 65189990 ~ 65190275 (+)
G1400202 LOC106566541 other upstream 2040504 64473548 ~ 64476421 (+)
G1402066 NA other downstream 25612 66543311 ~ 66543685 (+)
G1402256 NA other downstream 396666 66914365 ~ 66914716 (+)
LOC110492593 LOC105017353 other downstream 954245 67459278 ~ 67476876 (+)
G1403412 LOC106566473 other downstream 1135369 67653068 ~ 67653447 (+)
G1403463 NA other downstream 1221263 67738962 ~ 67739702 (+)

Expression


Co-expression Network