G1402731 (LOC106566502)



Basic Information


Item Value
gene id G1402731
gene name LOC106566502
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66531356 ~ 66531965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1601972
CTCAAATAGACGCAGCACGTTGGCAACCATGATGGACACAGAGCTGGCTGATGCCCCGATCACCCCTATCACACGCTCAGGCTTGCGGATGATGGGCGGCTCTCCATTGGAGCAGCGTATGTCCGAGGTGTCCTTCTGGATGAGGGCCTGGACGAAGGTGAGCGACTGTTCCAGGGCGTAGGTGTCTCTAGAGCATGTGTCCAGGATCCTGGCCCCCAGAGTAATGTTGGGGAGTAGCTCCGGGTCACTGTTGATCTGGTCCAGGGCGTAGAGCATAGCCTCCATGCGGTGAATGCCTTTCTCCTTCTTGATCTCCCCACAGGGCAGGCCATGAGGCCCCCTGGCGTGGATGGGGAACAGGCCTCCAAGGGTGATGTCTCCAGGGATCTTGATGGAGTGGGGATGGAAGTGTTGATGGGAGGCCCAGGACCCAGGGCTCATCCCCACACACAACATCCATAGGAGGCGAGGCCACGTGGTGGAATGACAGCCACCCCATCCAAATGGCCAAACCATGCCATACTGGTGGTGGTAGTGTAGAGATGGGGGGGATTTAGATGTCATGATGCTATGACTTTATTGGCACGTGTCTTTACCCTCTACTTGAAGC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1601972 True 610 lncRNA 0.57 1 66531356 66531965

Neighbor


gene id symbol gene type direction distance location
abt1 abt1 coding downstream 27401 66502032 ~ 66503955 (-)
cdk16 cdk16 coding downstream 52214 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 94454 66433948 ~ 66436902 (-)
si:dkey-32e6.6 LOC106566508 coding downstream 110292 66382003 ~ 66421064 (-)
bgnb bgn coding downstream 185713 66320422 ~ 66345643 (-)
zgc:86609 LOC106566500 coding upstream 51138 66583103 ~ 66587055 (-)
LOC118939570 NA coding upstream 166673 66698638 ~ 66706256 (-)
slc6a8 slc6a8 coding upstream 206361 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 290369 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 489970 67021935 ~ 67033045 (-)
G1402728 NA non-coding downstream 6264 66524726 ~ 66525092 (-)
G1402707 LOC106566505 non-coding downstream 36689 66484901 ~ 66494667 (-)
G1402659 NA non-coding downstream 154516 66359441 ~ 66376840 (-)
G1402604 NA non-coding downstream 213640 66234253 ~ 66317716 (-)
G1402732 NA non-coding upstream 683 66532648 ~ 66533823 (-)
G1402739 NA non-coding upstream 15260 66547225 ~ 66547438 (-)
G1402741 NA non-coding upstream 17485 66549450 ~ 66549712 (-)
G1402742 NA non-coding upstream 18317 66550282 ~ 66550616 (-)
G1402743 NA non-coding upstream 18958 66550923 ~ 66551150 (-)
G1402686 srpk3 other downstream 105034 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 776746 65715711 ~ 65754610 (-)
G1401617 NA other downstream 894984 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2082884 64445355 ~ 64485638 (-)
G1403498 NA other upstream 911456 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2259224 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2671321 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2745862 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2985790 69517755 ~ 69518113 (-)

Expression



Co-expression Network