Fish Transcriptome and Expression Database

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model fish

XLOC_033008 (CR628341.2)

Basic Information

Item	Value
gene id	XLOC_033008
gene name	CR628341.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	38597669 ~ 38597784 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064135
ATCACAGCCATATTACCCTGCAGTCCAAGACTCATTattcactaaagctaagcaggactgagcctggtcagtacctggatgggagaccatatggcaaaactaggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106101

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00064135	True	116	rRNA	0.47	1	38597669	38597784

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_033007	gabra5	coding	downstream	170727	38366936 ~ 38426942 (-)
XLOC_033006	CR407584.1	coding	downstream	239589	38132511 ~ 38358080 (-)
XLOC_033005	nipa1	coding	downstream	847958	37745719 ~ 37749711 (-)
XLOC_033004	nipa2	coding	downstream	852161	37733608 ~ 37745508 (-)
XLOC_033002	chst7	coding	downstream	975093	37603968 ~ 37622576 (-)
XLOC_033009	NA	coding	upstream	161762	38759546 ~ 38764326 (-)
XLOC_033010	cnga3a	coding	upstream	194116	38791900 ~ 38818582 (-)
XLOC_033011	hdac7b	coding	upstream	307263	38905047 ~ 38930726 (-)
XLOC_033012	vdrb	coding	upstream	356949	38954733 ~ 39006449 (-)
XLOC_033013	tns2b	coding	upstream	413919	39011703 ~ 39037613 (-)
XLOC_033003	BX322552.1	non-coding	downstream	982186	37615366 ~ 37615483 (-)
XLOC_032997	BX324166.3	non-coding	downstream	1150526	37447028 ~ 37447143 (-)
XLOC_032996	BX324166.2	non-coding	downstream	1158299	37439255 ~ 37439370 (-)
XLOC_032992	NA	non-coding	downstream	1253075	37342328 ~ 37344594 (-)
XLOC_033024	NA	non-coding	upstream	894062	39491846 ~ 39521832 (-)
XLOC_033025	CU467856.1	non-coding	upstream	927140	39524924 ~ 39525505 (-)
XLOC_033038	NA	non-coding	upstream	1440908	40038692 ~ 40044111 (-)
XLOC_033043	NA	non-coding	upstream	1575444	40173228 ~ 40182520 (-)

Expression

Co-expression Network