G1402787


Basic Information

Item Value
gene id G1402787
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66601157 ~ 66601881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1602030
GGGGTTAGACTCCATCTCGTCTTGAAATTCCTTTTTATTTTATCCGTCAATCAAATTACGTCCATTATGTCAGCGCACTGAACGAAGGTGTCAAAAGTCGATTTGCGACACGGTAGAGATGGATGCGATTTACAGATACAACACCGATTTGTTATTATGCAACAGTGATCCGATGGTAACACTTGCATCTCTCCCTCCATGCTACAGAAGCTGGTTATTGACAGTGGTGAGCTAGCTATCTAGAAGCTAACGGGTAGGAATGTTTGTTTAAGGGAAAGTCATGTTGATTTAATTATAGCAAATATGAGAATTAAATTCGCAAAACATTGATTCGCTCATTTTAGCTAGATAATCAAAACTTTCAAAATTACGTATGTAATTTTTGTTTTAAACAAATGACAACAGATCATGTTGCTAGCAAGCTAACATAATCGCCAAGATTGCGTCGCTGCCCCTTATGAAACCCCCACCGTCTCTCATTTGTGCGTCAATTCGAACGACTCAACGCTCAATGTAGACTTGCTTCCGAGTTCACTGGAGAGCGCCAAAAGTCCTCCATAATGTAAAAGGCGTTTGCGATTATAGTTCATGGTATAAAAACATTCAACAAGGTGTGTCTTTCTGACGCCCGAACGGCCTGACTTAATCCTTTGCTTTTCCCTCGTTGCTTCCTGTTTCCACAAATGCCTCGACTACTTTCGTGTTCCACCATCACTCATTGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1602030 True 725 lncRNA 0.41 1 66601157 66601881

Neighbor

gene id symbol gene type direction distance location
zgc:86609 LOC106566500 coding downstream 14102 66583103 ~ 66587055 (-)
abt1 abt1 coding downstream 97202 66502032 ~ 66503955 (-)
cdk16 cdk16 coding downstream 122015 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 164255 66433948 ~ 66436902 (-)
si:dkey-32e6.6 LOC106566508 coding downstream 180093 66382003 ~ 66421064 (-)
LOC118939570 NA coding upstream 96757 66698638 ~ 66706256 (-)
slc6a8 slc6a8 coding upstream 136445 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 220453 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 420054 67021935 ~ 67033045 (-)
LOC110492592 LOC106566478 coding upstream 870063 67471944 ~ 67492651 (-)
G1402783 NA non-coding downstream 9809 66591145 ~ 66591348 (-)
G1402782 NA non-coding downstream 11526 66589297 ~ 66589631 (-)
G1402746 LOC106566502 non-coding downstream 44427 66556131 ~ 66556730 (-)
G1402743 NA non-coding downstream 50007 66550923 ~ 66551150 (-)
G1402742 NA non-coding downstream 50541 66550282 ~ 66550616 (-)
G1402790 NA non-coding upstream 2325 66604206 ~ 66605461 (-)
G1402792 NA non-coding upstream 5806 66607687 ~ 66607942 (-)
G1402793 NA non-coding upstream 7470 66609351 ~ 66609552 (-)
G1402794 NA non-coding upstream 7680 66609561 ~ 66609788 (-)
G1402795 LOC106566498 non-coding upstream 9182 66611063 ~ 66611427 (-)
G1402707 LOC106566505 other downstream 106490 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 174835 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 846547 65715711 ~ 65754610 (-)
G1401617 NA other downstream 964785 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2152685 64445355 ~ 64485638 (-)
G1403498 NA other upstream 841540 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2189308 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2601405 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2675946 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2915874 69517755 ~ 69518113 (-)

Expression


Co-expression Network