G1402790


Basic Information

Item Value
gene id G1402790
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66604206 ~ 66605461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1602033
GTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTGGGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGGGTAGTGTAGTATTTCAATACAGTGGGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCCATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCCATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGGGTAGTGTAGTATTTCCATACAGTGGGTAGTGTTGTATTTCCATAAACTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTATAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCGATACAGTTGTTTCTGAGTAGTGTAGTATTTCCATACAGTGGGTAGTTTTGTATTTCCATACAGTTGGTAGTGTAGTATGTCAATACAGAGGATAGTGTAGCATTTCAATCCCcacagtagtgtagtagtgtagtgtttcAATACACTGGGTAGTGTAGTATTGTAGTATTTCAATACACtgggtggtgtagtagtgtagcatTTCAATACACTGGGTAGTGTAGCGTTCCAATACACTGGGTAGTGTAGCGTTTCAATACACTGGGTAGTGTAGTATTTCAATACACTGGGTAGTGTAGTATTTCAATACACTGGGTAGTGTAGCTTTTCAATACACTGGGTAGTGTAGTATTTCAATACACTGACTCTATAGTGTAGTATTTCAATAAAGtgggtagtgtagtagtgtagtatttcAATACACTGAGTAGTGTAGTAT
>TU1602034
TTTCATTACAGTGAAgagagtagtagtgtagtatttcAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTGGGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGGGTAGTGTAGTATTTCAATACAGTGGGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCCATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCCATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGGGTAGTGTAGTATTTCCATACAGTGGGTAGTGTTGTATTTCCATAAACTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCAATACAGTTGTTTCTGAGTAGTATAGTATTTCAATACAGTTGTTTCTGAGTAGTGTAGTATTTCGATACAGTTGTTTCTGAGTAGTGTAGTATTTCCATACAGTGGGTAGTTTTGTATTTCCATACAGTTGGTAGTGTAGTATGTCAATACAGAGGATAGTGTAGCATTTCAATCCCcacagtagtgtagtagtgtagtgtttcAATACACTGGGTAGTGTAGTATTGTAGTATTTCAATACACtgggtggtgtagtagtgtagcatTTCAATACACTGGGTAGTGTAGCGTTCCAATACACTGGGTAGTGTAGCGTTTCAATACACTGGGTAGTGTAGTATTTCAATACACTGGGTAGTGTAGTATTTCAATACACTGGGTAGTGTAGCTTTTCAATACACTGGGTAGTGTAGTATTTCAATACACTGACTCTATAGTGTAGTATTTCAATAAAGtgggtagtgtagtagtgtagtatttcAATACACTGAGTAGTGTAGTAT

Function

NR:

description
dynein heavy chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1602033 False 1003 lncRNA 0.35 2 66604206 66605343
TU1602034 True 1025 lncRNA 0.35 3 66604206 66605461

Neighbor

gene id symbol gene type direction distance location
zgc:86609 LOC106566500 coding downstream 17151 66583103 ~ 66587055 (-)
abt1 abt1 coding downstream 100251 66502032 ~ 66503955 (-)
cdk16 cdk16 coding downstream 125064 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 167304 66433948 ~ 66436902 (-)
si:dkey-32e6.6 LOC106566508 coding downstream 183142 66382003 ~ 66421064 (-)
LOC118939570 NA coding upstream 93177 66698638 ~ 66706256 (-)
slc6a8 slc6a8 coding upstream 132865 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 216873 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 416474 67021935 ~ 67033045 (-)
LOC110492592 LOC106566478 coding upstream 866483 67471944 ~ 67492651 (-)
G1402787 NA non-coding downstream 2325 66601157 ~ 66601881 (-)
G1402783 NA non-coding downstream 12858 66591145 ~ 66591348 (-)
G1402782 NA non-coding downstream 14575 66589297 ~ 66589631 (-)
G1402746 LOC106566502 non-coding downstream 47476 66556131 ~ 66556730 (-)
G1402743 NA non-coding downstream 53056 66550923 ~ 66551150 (-)
G1402792 NA non-coding upstream 2226 66607687 ~ 66607942 (-)
G1402793 NA non-coding upstream 3890 66609351 ~ 66609552 (-)
G1402794 NA non-coding upstream 4100 66609561 ~ 66609788 (-)
G1402795 LOC106566498 non-coding upstream 5602 66611063 ~ 66611427 (-)
G1402796 LOC106566498 non-coding upstream 6274 66611735 ~ 66612118 (-)
G1402707 LOC106566505 other downstream 109539 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 177884 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 849596 65715711 ~ 65754610 (-)
G1401617 NA other downstream 967834 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2155734 64445355 ~ 64485638 (-)
G1403498 NA other upstream 837960 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2185728 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2597825 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2672366 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2912294 69517755 ~ 69518113 (-)

Expression


Co-expression Network