G1402797 (LOC106566498)



Basic Information


Item Value
gene id G1402797
gene name LOC106566498
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66613390 ~ 66613617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1602041
GGAGGTGAACACTGTAGGAGTCAGAGTGTTGGTGGCACTTCCAGGGGCCAGAAGGCTGTTGACGGCAGCATTGACCTGATCCAGTGACAGACCAGGGGGTAGGAGGGTTGAGGAAGAGGGCAGTTCTAGGACTTTGGGCTTCTTGGCTTTCGGGGGTTGTACTTCCTGGGGCGACCAGGCTGGATGAGTAGCCGCTTGAAGAGCAACTGCTGGAGTCATGGAATTTTC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1602041 True 228 lncRNA 0.56 1 66613390 66613617

Neighbor


gene id symbol gene type direction distance location
zgc:86609 LOC106566500 coding downstream 26335 66583103 ~ 66587055 (-)
abt1 abt1 coding downstream 109435 66502032 ~ 66503955 (-)
cdk16 cdk16 coding downstream 134248 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 176488 66433948 ~ 66436902 (-)
si:dkey-32e6.6 LOC106566508 coding downstream 192326 66382003 ~ 66421064 (-)
LOC118939570 NA coding upstream 85021 66698638 ~ 66706256 (-)
slc6a8 slc6a8 coding upstream 124709 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 208717 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 408318 67021935 ~ 67033045 (-)
LOC110492592 LOC106566478 coding upstream 858327 67471944 ~ 67492651 (-)
G1402798 LOC106566498 non-coding downstream 285 66612490 ~ 66613105 (-)
G1402796 LOC106566498 non-coding downstream 1272 66611735 ~ 66612118 (-)
G1402795 LOC106566498 non-coding downstream 1963 66611063 ~ 66611427 (-)
G1402794 NA non-coding downstream 3602 66609561 ~ 66609788 (-)
G1402793 NA non-coding downstream 3838 66609351 ~ 66609552 (-)
G1402758 NA non-coding upstream 3145 66616762 ~ 66621895 (-)
G1402805 NA non-coding upstream 13988 66627605 ~ 66627858 (-)
G1402821 NA non-coding upstream 40490 66654107 ~ 66654745 (-)
G1402750 pim1 non-coding upstream 71274 66684891 ~ 66688075 (-)
G1402707 LOC106566505 other downstream 118723 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 187068 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 858780 65715711 ~ 65754610 (-)
G1401617 NA other downstream 977018 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2164918 64445355 ~ 64485638 (-)
G1403498 NA other upstream 829804 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2177572 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2589669 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2664210 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2904138 69517755 ~ 69518113 (-)

Expression



Co-expression Network