G1402750 (pim1)


Basic Information

Item Value
gene id G1402750
gene name pim1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66684891 ~ 66688075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1601993
ACATTGACAGCCTTTATGTACACTTAAGAATCAAGAATttgacagaatgtgtctcctgaAATTCTCATTTAATGTAAAGAGATTTGTGACAACTGACAGTGTATAAAACAATACATAAGTATTTACAACAAATATGACTATGCTACCTCAGCTCATTGACTATGATTATGTCAATGATAATTCCACTTAATTGTtaagaattatgttttttttttttatccaatttTCATGACAAGATTTCAATGTATTAACTCTTCCATTGGGTAAATTGAGTCATGAATGAGAAAATGTTTGTCATTACAGTCCCATCATTAAGGTAGGATTTAGATTAAGGCATATGATGAAGTCTCACCAACAtttaaacaacaacatatatacatacatacatacatacatacaattgGTCATGTGGGTTCCACTTGCAACAATAGaataaaagtaaataaataacacAAAAGTCAAAATCACCCAGTTTTGAACGTTGTCTATTGCCTTGAACAACAGTCACTGGTTAAAACACTGAGGCATTTACTTCAGGTAAACCTTCAAACTCCACAGAAAACAAGAACATACGTCCTTGGAAGGAAAATGGAAGCACAGATTTTAACTTCCCTCCCAGATAAAGATCACCCAGTTTAGTTTCTGGATTGGACACATTCTTGGATGATTCATTGCTGTGGTGTTGACAAACCCTTGGAGGCCTGCCCATCACAAAAAATTACACAAAAATGACATTCTAAAGGTCAATCCTGAAGGATAGTATTACATCCTGGATACTATTTGACATTCTAAATGCGttaaagttccaaaataatatgcaaatattatttTGCAGAGAAAACAGTGTCAATGTCCCATTCCCAAGACTACTCAGCTCCAGCGAATAAGTCCATTGTATGAGGCGTATGAGCCTGACTTGCGTGTCCATAGAAATGTTGCCTTGCCTGTGTCACTACCAAACCATCAGGACAAAATCCATGGAAAATTTAAGATATCCATAGTGCTCCGGACTACTGTTGTTTTGTAGTCCTCTATTCCTCTTGAAACGAGGTAACTTAAATAACCTGTAAAACCAGGTCTTCACATGGAAAAGTATGTGATCTCAACCAAATCACATTAAATAATAGAATCAAATGGCATCAGAAACTTCGACATGCCTCCAGTATAACTGATGTAAACAGAAAGTCCAACCCTAAAGATGAATAAATAGTCATTTAAATAAATACCcataaatgattttttttttttaaataaagcatACATATCTCTTCCCAATATGGTCTATATTACTATGGAATGTGCTGTTTTCTAACACTTATGAAGATAATTTAGATATAGTTTGCCTTGGCTCAAGATAAGTGTGTGATACATTTCTTTGTACTAAGGTAGTACATTAGTGCAGAATTTTTTGTATAATACTtgtcaaattaaaataaaatagtattGCAACACCACAAAATTATAAATAAATAGCTTTCCATAGGGGGACTTGATAAGTTAAGCACAGAGAATATAAGATAAGTGTGATCTTAAAAGGCATCTGAAGTTTCTTTAGCCACCCAATAGTATCCAGGAATCATAGGCTTGACTGGCTTGGCAAAGAGTTGTGATCCCCATGCAAGTCTCCACTGTCGTTAGATGACTCCATCCAGGGATGGAGTAAAATCTCTTCTAAGCTTGGCCGATCTTCTGGTCTGTAGGCAAGGCACCAACGAACCAAAGACTGGCACtctgtggaggggaggggaggggggggatttTCAGTCATGATGAATTGTATTTAGAAATGAAATCCATAATTTGTTCTGTCATTGCCCTAGAAATGTTGTCAGATAGTAAGAATAGGCCTATGTAGTAATGTACCTTTTGAAATGCGTTTGGTGAAACTTGGCGTGGCCTGCAcaatgtctctgtccctctcaaaGGGGATGTCCCCGCAAACCATGTCGAAGAGAAGCACTCCTAGTGACCAGACAGTCAGAGACCGGGCATGATAGTGTTGATGTTGGATCCACTCAGGAGCATATACCTTTGTGCAAGTGGCTCATCCAGGGCTCCCCGCTCTGTGATGAAGTCAAAGAGGTCCTGACTGGGTTGTGGTCTTTCGAACACGATGAGGAATCCCTGTCCTGGCACCTCAAACCAGTCCAGCATCCTGATCACCCCATGGTGCCAGGGTCCTGCCCCTGCACCACCCCCCAGCTGTAAGAGCAGGGCTATCTCCATGGGTACCAGGTTGGGTCCATCTGGCATCGCGCCCATTGCTGCACTCTGTCACTTGAAACTTGCTTAATTGCCACC

Function

symbol description
pim1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within camera-type eye morphogenesis and optokinetic behavior. Predicted to be active in cytoplasm. Is expressed in brain and eye. Orthologous to human PIM1 (Pim-1 proto-oncogene, serine/threonine kinase).

NR:

description
serine/threonine-protein kinase pim-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1601993 True 2301 lncRNA 0.39 3 66684891 66688075

Neighbor

gene id symbol gene type direction distance location
zgc:86609 LOC106566500 coding downstream 97836 66583103 ~ 66587055 (-)
abt1 abt1 coding downstream 180936 66502032 ~ 66503955 (-)
cdk16 cdk16 coding downstream 205749 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 247989 66433948 ~ 66436902 (-)
si:dkey-32e6.6 LOC106566508 coding downstream 263827 66382003 ~ 66421064 (-)
LOC118939570 NA coding upstream 10563 66698638 ~ 66706256 (-)
slc6a8 slc6a8 coding upstream 50251 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 134259 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 333860 67021935 ~ 67033045 (-)
LOC110492592 LOC106566478 coding upstream 783869 67471944 ~ 67492651 (-)
G1402821 NA non-coding downstream 30146 66654107 ~ 66654745 (-)
G1402805 NA non-coding downstream 57033 66627605 ~ 66627858 (-)
G1402758 NA non-coding downstream 62996 66616762 ~ 66621895 (-)
G1402797 LOC106566498 non-coding downstream 71274 66613390 ~ 66613617 (-)
G1402798 LOC106566498 non-coding downstream 71786 66612490 ~ 66613105 (-)
G1402751 NA non-coding upstream 38688 66726763 ~ 66727652 (-)
G1402855 NA non-coding upstream 48295 66736370 ~ 66736681 (-)
G1402888 NA non-coding upstream 109070 66797145 ~ 66797353 (-)
G1402906 NA non-coding upstream 130946 66819021 ~ 66819255 (-)
G1402707 LOC106566505 other downstream 190224 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 258569 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 930281 65715711 ~ 65754610 (-)
G1401617 NA other downstream 1048519 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2236419 64445355 ~ 64485638 (-)
G1403498 NA other upstream 755346 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2103114 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2515211 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2589752 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2829680 69517755 ~ 69518113 (-)

Expression


Co-expression Network