G1402751


Basic Information

Item Value
gene id G1402751
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 66726763 ~ 66727652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1601994
TGagaaatatatttattttgcaTTTACACACCAACAGCATTGACCATGTTCATACATGTAGTTGACTGCAAACATAGATGCTGTAATCCAAAGAAATACATTTAGTTATAATGAAACAGCAAACGTCTTCCCTCCAAGATAAAGGGAAAACTTTGATGTGACATAATTAGCTAACATTTCTTGAAAGGACAGTAGAAGATCATACGATGTGTAAATGCAGTGTGAGAAAGTCATCATGCAAAAATAGGTCAGTTAAATGACATCACTTTTAAGGCCACCAAATGAGATTATATAATAGAATTAATAACGTCAAGAGTCAATGACTAAACAGCAAGGAGAAAATCTGCAAAACCTTTTGAGACTCATCTTCTCTGTTGAGAATATAAATTTCAATAGCCCTTGGACTAAGGAATGAATATCACCAGTGTCTGACAAAATGGAAAAACTGACAATgtaatgaggggaaaaaagtggCGCGTAAAATCAGATGGCTTACAGACATCTACCACCTACTGTAAATAGTTCATCAAAACAAACCCCTCGCCCACAAGAAAATAGATGAAAGCAAAAGAAATCGTCAAATACATAGAACCTTCACCTCGAGTACTAGGCCTGCTCGGCGACCTTGTAAAGGACGCATTATAAGTGAAGGTAACTAAACACTGATATTACATATAAACATGGATGAATAGTGTACTCATGCCTGTTCTTAGGCATGTTAATATTACCACAAACTAAGAATTTCTCGTACAACACCAGACGGACCCCGACAGGTTACCATCTCCCCTGGTCAGAGTGGCCATGACAGTGACTTTCTACAAGTCCCTATTTTTACCTGGTGCAACAATTCATGATGTAATTCCTCAGATGACCCAAAGCACTAATTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1601994 True 890 lncRNA 0.37 1 66726763 66727652

Neighbor

gene id symbol gene type direction distance location
LOC118939570 NA coding downstream 20507 66698638 ~ 66706256 (-)
zgc:86609 LOC106566500 coding downstream 139708 66583103 ~ 66587055 (-)
abt1 abt1 coding downstream 222808 66502032 ~ 66503955 (-)
cdk16 cdk16 coding downstream 247621 66442214 ~ 66479142 (-)
tsr2 tsr2 coding downstream 289861 66433948 ~ 66436902 (-)
slc6a8 slc6a8 coding upstream 10674 66738326 ~ 66767036 (-)
LOC110492586 LOC106566493 coding upstream 94682 66822334 ~ 67012161 (-)
LOC110492588 LOC106566492 coding upstream 294283 67021935 ~ 67033045 (-)
LOC110492592 LOC106566478 coding upstream 744292 67471944 ~ 67492651 (-)
LOC110492594 LOC106566480 coding upstream 772013 67499665 ~ 67510144 (-)
G1402750 pim1 non-coding downstream 38688 66684891 ~ 66688075 (-)
G1402821 NA non-coding downstream 72018 66654107 ~ 66654745 (-)
G1402805 NA non-coding downstream 98905 66627605 ~ 66627858 (-)
G1402758 NA non-coding downstream 104868 66616762 ~ 66621895 (-)
G1402855 NA non-coding upstream 8718 66736370 ~ 66736681 (-)
G1402888 NA non-coding upstream 69493 66797145 ~ 66797353 (-)
G1402906 NA non-coding upstream 91369 66819021 ~ 66819255 (-)
G1402914 NA non-coding upstream 103049 66830701 ~ 66830945 (-)
G1402707 LOC106566505 other downstream 232096 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 300441 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 972153 65715711 ~ 65754610 (-)
G1401617 NA other downstream 1090391 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2278291 64445355 ~ 64485638 (-)
G1403498 NA other upstream 715769 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 2063537 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2475634 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2550175 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2790103 69517755 ~ 69518113 (-)

Expression


Co-expression Network