XLOC_033011 (hdac7b)


Basic Information

Item Value
gene id XLOC_033011
gene name hdac7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 38905047 ~ 38930726 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064141
aagcgaacaactgttgatgtAGTGAGAAGAGAGGAAGCTGAGCAGGAGGGGCTTCAGTCAGTAAATGTAGCTGTACTGTATGTCACTCAGCTAAATCACACCTTTGGAGTTTACAGCAGTGGAGCGCCAGTGTTTCTGCAGATGCTTGCATTTCAGATTTCTGCTGTTCATTTTATAGTGTGGACTCTAAAGTGAGCAAATGCATTTTAGTTGGTTTTGAGGACTTGATGCCCGGAAGTACATATTAGAAGTGGAAAAGATATGCAGACGTGACAGATGTCTCACCATCAGCAGCACCGGACACTGGAGAGAGGGAGGAGGAGCACACAAGAGGACAAACTGTCTTTGAGGAAAGAGAGCGAACAAACAGGTGCTGGCTGTAGTCTCTCGGTGAGAAGAAAGCTGTATGAGTATATCTGCAATAAGCAGCACAGGACATCTGCAGGTCAGGACATACAGCAGCGTGAATTAGACCGACAGGAAGAGGACAATCCACTAAGAAGAACAGccTCTGAGCCTATTCTGAAGCTGCGATCAAAGAGAAGTATGACGGGGAGACAGAATCCATTGCAGCGTAAAACCAGCGCGCCCCCTGCTGTCGGGGATCCAGACTCCATGGcgGTTTCTGCCAGTTCTGCTACAGTTTCATCACTAGATAATCAAATGAATCGTCAAGAGCTGATTCAAACCACAACCTACAGTGCATCATCAGGCAAGGAAGACTCTCCTTTACAAATCAGCATTCAGCACCCCGTCCTCTGGCCTGCATATGCTGCCACTGCTTACAATCCTCAGGTCTTCACTCTTTATCCACATATTTTTACAGTTACTGGGCAGCAGTGGCCGCCGATGCCTCATAGACCTTTAATCAAATCCCAGTCAGCACCTTCTTATATACagcaatacacacatatacacactccgGCTTATACACTGGTACAACCCATGTACCAACAACAGTGGCCACAAGAGACATTCCAGCAACACACCCTTCCAGAAAAGGTTTCAGTTGGCCCAGCATGGCCTGAGTCTCCTGGAGATCTGGGAAGGTTCAGAAAGAGAACAAGTGAGGAAGTACGCATTTCATCTCAATCCCCGCTTGAAAGCTGTAATCGACAGGGAGTTCAGCTGAAAGAAAACTTGGAATGGAGACACAAAATATTTCACCAGCAGGTTTCACGTGTGCATTCCTTTCCAGACACCTTTGACACACGTCTGTCTTCACATTCAGCCTCAGCTCTGGACATGAGAAAACCAAACTTCACCACAGGCTTGGTGTATGAGATGATGAAGCATAGGTGTGACTGTAGAGACAGCAGCTGTGGTCTTCATGAAGCTGACCGAGTTACAAGTATCTGGTCAAGACTGCAGGAGTGTGGCCTGAGGAGTCAGTGTAAGCTGCTTAAAGGCAGGTCAGCCACTGTCGAGGAGCTACTCTCAGTCCATTCAGAGgaacttgtttgttttttcactgGACCAGAACCATATCGAAGTCAAATGGACATTGGTACGATGTGGAAAAATCCCAGAAATTCAGAGGCACTGAAGATGGCTGTTGGTAGCGTGACAGAGCTAGCGCTGTGTGTGGCCAGAGGAGACCTGAGGAATGGCTTTGCTGTAGTCACACCTCCTGGACATCATGCATCACGTTCTCAAACACTTGACTCCATTGTTTTTAATTCTGTGGCCATTGCAGCTAAACAGCTTCAAGAACAATTAAAGGTTAAAAAGATCCTTATTGTAGATTGGGATGTTCATCATGGCAGTGGAACTGAGTCGATATTCTACACAGATCCCAGTGTCCTCTATATTTCTCTGCATCGCTATGATGATGGCGCATTTTTCAATGGTACTGGAGATCCCAGCAGGGTAGGATGTGATGTTGGAAGAGGTTATAATGTAAATGTGGCCTGGTCGGGAGGACTGAGACCTCCAATGGGAGATGCTGAATACCTCGCTGCATTCAGAACGGTAGTCATGCCAATTGCTCATGAGTTTTCCCCAAATGTGGTCCTGGTTTCAGCTGGTTTTGATGCTGCCGAGGGGCATCCAGCTGCTCTGGGAGGATACAGAGTCTCCCCTAAATGTTTTGGATGGCTGACGCAGAAGTTAATGGAGCTTGCTGAAGGACGAGTAGTGCTGGTGTTAGAGGGAGGTTATGAGCTTGTCTCCCTTTGCGATGCGTCCCAAGCTTGTGTCAGTGCTCTTCTAGGAAatgagCCTGAGCCTTTATCTGAGGTGGAGTTACTGAGAAGTCCCTGTGCTAATGCAGTCTGTTCTCTGGAGAAAGTGCTGCATGTTCAGAGTTTGCACTGGCGTTCAGTGCGGTCCATGCTGAATACTGTGTCTCTGTCCTATGTTAAAGCAGAGAGGAGAGTCTCGGCAGGCAGTGAAGCTGCTTTAGTGCTGAGTGGCCTCAATATGACTGTTCCACACAGAAGACAATTGCCCAATGAGCCAGTGGAGGACGATGAAACCCATTCGACAGTTTCCTTTACTAGAAGAACCTTTTCCTTTCAAAGCAGAAGCTGATCAATAATCTGctgtaagctgaaggaaatgcaGGACACAATCCAAAAAAAGAGCACTTCTCTAATCACACGAATGCTTCACTCAAATGCTGAGTCAtttctgaggtttttttttttttacttaacattaGCTTGCACATGACAGACAAATCAAACTAGCATAGTACAAACAGGAAATGAACATGTATGAGAAATGAGTTTTAAAGGTTCTTGTTCAGGATATTTGACTGTTTAGTGGAACAAATTTGGTAGACACTGCTTTTTAAAGGTTTGGTTCAGtcctttattttgtttgttgaaaaaacaacaacaagaaaaacgTAAAATGTGAAATCTTTGCTGGTTTTTAAGCTGTCTGTTAACTAAATAATCTGGCAGATATGCAGCATAGTTTTCAGAAAACATTCACAGTAATTCACGTTTCTTAAGTATCAAATCATATTTCTAAACGATCAGGTGACGCTGAACACTGGAATAATAACCATGAAAGAACAtgggaataaattaaattgtaattacataatatattttttcaaatacattttctatttttttagaatat
>TCONS_00064142
AACGGTAGTCATGCCAATTGCTCATGAGTTTTCCCCAAATGTGGTCCTGGTTTCAGCTGGTTTTGATGCTGCCGAGGGGCATCCAGCTGCTCTGGGAGGATACAGAGTCTCCCCTAAATGTTTTGGATGGCTGACGCAGAAGTTAATGGAGCTTGCTGAAGGACGAGTAGTGCTGGTGTTAGAGGGAGGTTATGAGCTTGTCTCCCTTTGCGATGCGTCCCAAGCTTGTGTCAGTGCTCTTCTAGGAAatgagCCTGAGCCTTTATCTGAGGTGGAGTTACTGAGAAGTCCCTGTGCTAATGCAGTCTGTTCTCTGGAGAAAGTGCTGCATGTTCAGAGTTTGCACTGGCGTTCAGTGCGGTCCATGCTGAATACTGTGTCTCTGTCCTATGTTAAAGCAGAGAGGAGAGTCTCGGCAGGCAGTGAAGCTGCTTTAGTGCTGAGTGGCCTCAATATGACTGTTCCACACAGAAGACAGTAAGACTACAGTATAAAGTAAAATAGTCGAGTTCTGAAagtacaaataacatttattttctccCCAGAGAAACTTCAATGTAACTTATTGAATCTTTAATAACACGCTTTTGTTGAGG

Function

symbol description
hdac7b Predicted to enable hydrolase activity. Predicted to be located in nucleus. Orthologous to human HDAC7 (histone deacetylase 7).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-113 Predicted to enable hydrolase activity. Predicted to be located in nucleus. Orthologous to human HDAC7 (histone deacetylase 7).

Ensembl:

ensembl_id ENSDARG00000073850

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064141 False 3093 mRNA 0.44 20 38905047 38930726
TCONS_00064142 True 596 lncRNA 0.46 4 38906751 38908013

Neighbor

gene id symbol gene type direction distance location
XLOC_033010 cnga3a coding downstream 86465 38791900 ~ 38818582 (-)
XLOC_033009 NA coding downstream 140721 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 coding downstream 307263 38597669 ~ 38597784 (-)
XLOC_033007 gabra5 coding downstream 478105 38366936 ~ 38426942 (-)
XLOC_033006 CR407584.1 coding downstream 546967 38132511 ~ 38358080 (-)
XLOC_033012 vdrb coding upstream 24007 38954733 ~ 39006449 (-)
XLOC_033013 tns2b coding upstream 80977 39011703 ~ 39037613 (-)
XLOC_033014 tns2b coding upstream 108754 39039480 ~ 39051319 (-)
XLOC_033015 eif4bb coding upstream 134098 39064824 ~ 39080701 (-)
XLOC_033016 stat2 coding upstream 192818 39123544 ~ 39160422 (-)
XLOC_033003 BX322552.1 non-coding downstream 1289564 37615366 ~ 37615483 (-)
XLOC_032997 BX324166.3 non-coding downstream 1457904 37447028 ~ 37447143 (-)
XLOC_033024 NA non-coding upstream 561120 39491846 ~ 39521832 (-)
XLOC_033025 CU467856.1 non-coding upstream 594198 39524924 ~ 39525505 (-)
XLOC_033038 NA non-coding upstream 1107966 40038692 ~ 40044111 (-)
XLOC_033043 NA non-coding upstream 1242502 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 1452698 40383424 ~ 40409125 (-)

Expression


Co-expression Network