G1403022 (gripap1)


Basic Information

Item Value
gene id G1403022
gene name gripap1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67053776 ~ 67056045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1602279
ACCACAGGTTttcccctggaatgagtaggtggaGCAGGCACTTTGCTCTTGGCGGTATAAAGGCTCTGCGGTGACCGACTTGACTCTCTCAATCCCGTGAGACACTTGACAGAAGTACCGATCGTGACAACAAAACAACTCTCACAGACAGTAACAAAGTTTCggtataccgtgcaacactagGGCCAACTGCAGTGAACAAAGCCTACATGCACTCTCAGTCAGTATTCCCCTGGCCCGGAGGAAAGTGTCTGAGTGTGTTGCTGTGTACACCACTCTGCCGTGTCTGAGAAGAggaaaacaagtcaaacaaccTCCAGTTGGAGAGAGTGTTCTTCCTGCAGCTTCTCCGTGCTCTCCTGGTGCTCCAGACAGCTCTTCTCCATGCTCTCCTCAGCATCTTTGAGTCTGCGTTCGAACCAGCCCTTAGTGTCCTCCATGGACTGGACCTGGGCCTGCAGCTCCTCCACACACTGCTGCAGACCCTCCAGCTCCTTATTGCGAGCctTCTCATCTCGGAGCTGTGAGCGGATCCCCTCCTCTGTGCGGTTCTTGTCCTCATGGAGTCCCCTCAGCTCCTTCTCGTAGCGTGCCCGCACCCCCAGCACCTCCTTCTCATGCTGCAGACGCACGTCGCTCAGCTCCTCCTTGTGCCGGGACTTCTCTGTGATTATCTCCATGGCCAGTTCATCCAGCATGACCTTCCGCTTGTCAGCTGTCT

Function

symbol description
gripap1 Predicted to be involved in neurotransmitter receptor transport, endosome to postsynaptic membrane; regulation of intracellular transport; and regulation of modification of synaptic structure. Predicted to be active in glutamatergic synapse and postsynaptic recycling endosome. Predicted to be extrinsic component of postsynaptic early endosome membrane. Orthologous to human GRIPAP1 (GRIP1 associated protein 1).

NR:

description
GRIP1-associated protein 1 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1602279 True 721 lncRNA 0.55 3 67053776 67056045

Neighbor

gene id symbol gene type direction distance location
LOC110492588 LOC106566492 coding downstream 20731 67021935 ~ 67033045 (-)
LOC110492586 LOC106566493 coding downstream 41615 66822334 ~ 67012161 (-)
slc6a8 slc6a8 coding downstream 286740 66738326 ~ 66767036 (-)
LOC118939570 NA coding downstream 347520 66698638 ~ 66706256 (-)
zgc:86609 LOC106566500 coding downstream 466721 66583103 ~ 66587055 (-)
LOC110492592 LOC106566478 coding upstream 415899 67471944 ~ 67492651 (-)
LOC110492594 LOC106566480 coding upstream 443620 67499665 ~ 67510144 (-)
LOC110492595 LOC106566479 coding upstream 456453 67512498 ~ 67571087 (-)
LOC118939572 NA coding upstream 517676 67573165 ~ 67604966 (-)
LOC110491154 LOC106566473 coding upstream 552779 67608824 ~ 67772580 (-)
G1403006 NA non-coding downstream 35787 67017677 ~ 67017989 (-)
G1402957 NA non-coding downstream 116139 66937419 ~ 66937637 (-)
G1402956 NA non-coding downstream 117299 66936244 ~ 66936477 (-)
G1402955 NA non-coding downstream 118891 66934491 ~ 66934885 (-)
G1402949 NA non-coding downstream 126727 66926625 ~ 66927049 (-)
G1403025 NA non-coding upstream 646 67056691 ~ 67057203 (-)
G1403024 NA non-coding upstream 1218 67057263 ~ 67061865 (-)
G1403020 NA non-coding upstream 70601 67126646 ~ 67128821 (-)
G1403103 NA non-coding upstream 143551 67199596 ~ 67201752 (-)
G1403117 NA non-coding upstream 170830 67226875 ~ 67228689 (-)
G1402707 LOC106566505 other downstream 559109 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 627454 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 1299166 65715711 ~ 65754610 (-)
G1401617 NA other downstream 1417404 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2605304 64445355 ~ 64485638 (-)
G1403498 NA other upstream 387376 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 1735144 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2147241 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2221782 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2461710 69517755 ~ 69518113 (-)

Expression


Co-expression Network