G1403020


Basic Information

Item Value
gene id G1403020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67126646 ~ 67128821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1602277
TTCTTGAAAACACATTTTATTAGTCTTATGTTTCTTAGGACCTGCCAAAAACAtatttgtgatggtgtatattcaatGAATTTATTCAAATACACCTCCCACTCCTAATCTTGCCGGCATGTGCACGGGAGGTATGAGAGGCTTATCCCGACTCTAAAAAgcattacctttttttttttaaacaagcaaaGGCTGTCTGTAAAAGGTATGAGATGAAGAAGTCATCTTTCGTCTTTGTtgtgagtggagggggaggggcttggtgtctgtggagcgAGAAGAGACAAAAAAATACATCAAACGCTCATAAAAATGAACATCAAATAAAAACCTAGATTCTTGTGACATAGGCATTTGAAACATCACGCCAACAAATATATTTGAATATATCATATTAATTTGATATATCGCCCAGCCTTATTTGTACATAAGAGAAGAcattcttggggggggggggggcttccaaTGACCAATCTGTTCATTCCTAAACAAGTGTTCACGGAGGCCTGAATGAAGTGCATACATTCTCAGATAAGGGAAACATGTCGCAAAGTATAAAAGGCTAACACAGGTAGGTATGCACGCCGTGTTAGACCACCCTGTGTTATACCATCCGATCTGCCCAGCTACTGCTGTTCAGTCATGTTGAGAAGTCATTTAAAATAAGACATTTGCCAAGTGAGTCAAAGACAGGTGAAATAGAAGGCACCGCTTCACATGATTCATGTTTCCCTCATCCTACAGGGCATGGGGCCAGGTATTGACGGCAGATAATAAATATTGGTGATGAGTTTCCTGTCCATGTTGTACTCAGCGAGCACACTGATGAGTTTTGCCAGAGTGAAGGAAGAGTTGAACTCAAGACAACTGACACTGTTGTTAGACCTCAGCCAGGGGGGCAAATTCATCTGCTCATCACAGAGAATCCTCTGCTTCCTCTTATTTGGAATCTAATATTTTTAGAAAATATCAAAGTGGAGTTAAGCCGGAATTAAATGTCCAAATCTAACCACACCTGGAGTCTTAATTGGGGATAGAGAAAGCAGCCAAAGTGACATTTTGAAAGCGGGCCACAAAGCAGGCATCCAGCCAGTCTCTGTGGAGTTGGACATCATGTTCATGTTGACACCAGATGCTGAGCTGCCAAGGCCTCCTCCGTGCTTCTGCTGCAGTCACGGGACTGGTGCAGATGAAAAGGAAACGAGCACAGAGATCTAACCCAGTGAGTGGACACAGTGGTGGTTTGGTCCAGTCCTCAACACTATGCATGTTATTGAgtttttgtaaatatatttttttactactGGCTTTAGGATACTCACACTTTCCCCAGACAAACTCAAACTGGACATTTCAGCATCTAGAATGTATGACGGACATAAAACCTTTACAATCATTTTGGCTCATATAcaatactgtaacgaccctgctgtttcattacaatacgtATTACTCTGAGAACAGTTAAATTACTACAGTTGATTTTTCATATTCATATATACAGGATTTATACAAACAAAAACAAGAGTTGCAGAGTTGAAAGTATAAAGAAATGAATAAGAGTACAGGCAAAACACAACAGCTTAAGCCTCTGTATGAGTAGGCAGGATGTCTCTTGTTATTCGCAACATTAAATCATCTCTTGAAGTCGTGAACCAGTAAAGCACTGTGTTCTGGCATCCAGACATAGTTGCCTTCTGCCGTTCTTCAGATCAACACCAGAGTGGGGAGGCAGAgagtgcagacagacagaagtcAGATCAACACCAGAGTGGGGAGGCAGAgagtgcagacagacagaagtcAGATCACAATACCACAGTAAGATCCAAGACATGTTACAGTAAGTACATTCAGCAGTAAAGCAGTTTCAAGAGCAATAACCCCTTCCTACCCCCCTCCTTTCATCTGTGTTCCCAGACAGaggttcagtcagtcagttaggtAATGTCCTCTTGTTGGCCACAGAAACAGGtgaagagagagggcagagaggagggacTTGTTCCAGTCTTTTAGTCCGTAGCTGAGCCAGCTCCAGGACTTGAGTCTTTACTTAAACGGACAATCTCCTGAGACAGAACTTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1602277 True 2090 lncRNA 0.42 3 67126646 67128821

Neighbor

gene id symbol gene type direction distance location
LOC110492588 LOC106566492 coding downstream 93601 67021935 ~ 67033045 (-)
LOC110492586 LOC106566493 coding downstream 114485 66822334 ~ 67012161 (-)
slc6a8 slc6a8 coding downstream 359610 66738326 ~ 66767036 (-)
LOC118939570 NA coding downstream 420390 66698638 ~ 66706256 (-)
zgc:86609 LOC106566500 coding downstream 539591 66583103 ~ 66587055 (-)
LOC110492592 LOC106566478 coding upstream 343123 67471944 ~ 67492651 (-)
LOC110492594 LOC106566480 coding upstream 370844 67499665 ~ 67510144 (-)
LOC110492595 LOC106566479 coding upstream 383677 67512498 ~ 67571087 (-)
LOC118939572 NA coding upstream 444900 67573165 ~ 67604966 (-)
LOC110491154 LOC106566473 coding upstream 480003 67608824 ~ 67772580 (-)
G1403024 NA non-coding downstream 64781 67057263 ~ 67061865 (-)
G1403025 NA non-coding downstream 69443 67056691 ~ 67057203 (-)
G1403022 gripap1 non-coding downstream 70601 67053776 ~ 67056045 (-)
G1403006 NA non-coding downstream 108657 67017677 ~ 67017989 (-)
G1402957 NA non-coding downstream 189009 66937419 ~ 66937637 (-)
G1403103 NA non-coding upstream 70775 67199596 ~ 67201752 (-)
G1403117 NA non-coding upstream 98054 67226875 ~ 67228689 (-)
G1403142 LOC106566489 non-coding upstream 134207 67263028 ~ 67263380 (-)
G1403143 NA non-coding upstream 135649 67264470 ~ 67264707 (-)
G1403144 LOC106566489 non-coding upstream 137223 67266044 ~ 67266261 (-)
G1402707 LOC106566505 other downstream 631979 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 700324 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 1372036 65715711 ~ 65754610 (-)
G1401617 NA other downstream 1490274 65635482 ~ 65636372 (-)
si:ch211-117c9.5 LOC106566567 other downstream 2678174 64445355 ~ 64485638 (-)
G1403498 NA other upstream 314600 67443421 ~ 67444179 (-)
LOC118939478 LOC106566484 other upstream 1662368 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 2074465 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 2149006 69277827 ~ 69280359 (-)
G1405172 NA other upstream 2388934 69517755 ~ 69518113 (-)

Expression


Co-expression Network