G1402397


Basic Information

Item Value
gene id G1402397
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67169437 ~ 67170722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1601566
GAGAGGCACGATTTGTTTATGTAGAAAAAAGCTCGTTTTAAATCTTAGCTTCTTAACCAGCTTATCTAAATGTTTTTTAAACGTCAAATCCATATCAATCCAAATGCCTAAGTATTTATATGCAGGAACACTTTCAATTGGAGAACCATCtaatgagtGAACATGTAGTTCATCTGAAACATTCTTACGAGAGTTTAGAAACATAATGTATTCCGTTTTGCCCGTAAAGTTTTAAATCAGCAGAGAATTCCTGCATAGCTATAAAAATCTGACTGTAGTTTTGACAcagccagatcaacagtcagGGCGACAGCATACATAATAG

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1601566 True 325 lncRNA 0.35 2 67169437 67170722

Neighbor

gene id symbol gene type direction distance location
LOC118939477 NA coding upstream 22074 67133110 ~ 67147363 (+)
LOC110492587 gripap1 coding upstream 40611 67034399 ~ 67128826 (+)
bcap31 bcap31 coding upstream 443021 66703053 ~ 66726416 (+)
slc35a2 slc35a2 coding upstream 467767 66689062 ~ 66701670 (+)
pim2 pim1 coding upstream 481361 66684106 ~ 66688076 (+)
LOC110492589 kcnd1 coding downstream 1108 67171830 ~ 67251627 (+)
LOC110492590 LOC106566489 coding downstream 89327 67260049 ~ 67275741 (+)
pim1 LOC106566482 coding downstream 228139 67398861 ~ 67402310 (+)
LOC110492593 LOC105017353 coding downstream 288556 67459278 ~ 67476876 (+)
LOC110492619 LOC106566466 coding downstream 1104773 68275495 ~ 68279289 (+)
G1402364 NA non-coding upstream 44395 67124642 ~ 67125042 (+)
G1402325 LOC106566492 non-coding upstream 144008 67023337 ~ 67025429 (+)
G1402323 NA non-coding upstream 150789 67018349 ~ 67018648 (+)
G1402254 NA non-coding upstream 257011 66912211 ~ 66912426 (+)
G1402399 NA non-coding downstream 82015 67252737 ~ 67253139 (+)
G1403135 NA non-coding downstream 105229 67275951 ~ 67276164 (+)
G1403158 NA non-coding downstream 107025 67277747 ~ 67278061 (+)
G1403167 NA non-coding downstream 111996 67282718 ~ 67282997 (+)
G1402256 NA other upstream 254721 66914365 ~ 66914716 (+)
G1402066 NA other upstream 625752 66543311 ~ 66543685 (+)
G1401782 NA other upstream 1145192 66019001 ~ 66024245 (+)
G1401354 NA other upstream 1272374 65895891 ~ 65897063 (+)
G1401074 NA other upstream 1910593 65258515 ~ 65258844 (+)
G1403412 LOC106566473 other downstream 482346 67653068 ~ 67653447 (+)
G1403463 NA other downstream 568240 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 602834 67773293 ~ 67777491 (+)
G1404105 NA other downstream 1118793 68289515 ~ 68290086 (+)

Expression


Co-expression Network