XLOC_033019 (os9)


Basic Information

Item Value
gene id XLOC_033019
gene name os9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39202685 ~ 39218609 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064160
ACCAAATAACAAATCATTTGACAACGCTTGTTTGCGATATGAGAGAACTATGGCTTCCTCCTTGATTAAGTGGTTAAGAGGATTATATGTGTTTTTCTTAACATGTCTCCTGTCTGTCTTTGCCTTTTTGAATCTAGAAGAATTAAACGAAATGAAATATGGCATACAGATTCTCCCCGATCCTGTTATCATGGGACAGATGGAAGATGTAATGTTGGTCTCTAACAAATACAAGCAGCTGTATGAGTGTCGTTTACCAGCTCAGGCAGTGCGTTTCCATCAGGACCCGGTGTCAGAGCCTGATGTGCAGGGTTACAGCGGCCCCGGGGTCCCTGAGCTCCTCAAGCCCATGCAGACGGCAGCATGTCTGATTAAGACCAAAGACTGGTGGACCTATGAGTTCTGCTACGGCCAGCACATCAGACAATACCACTTAGAAGATTCGGAGATCAAGGGAGATGTACTGTTTTTGGGATATTATGATACAGAGTTTGACTGGACGAATGAAACTGCAAAGgcATCTAAGCAGCATAAGCTGAAGAGGTATCACAGTCAGTCATATGTCAATGGCTCAAAATGTGACTTAAACGGCAGTCCCAGAGAGACGGAAGTCAGATTTGTGTGTGAGGAAGGCTCTACTGACTTCATTTCACGGGTGGATGAACCCCAGTCTTGCCGCTACGTCTTGACAGTCCACACCTCTCGCACGTGCCAGCATCCCCTTCTGCGCCCACCGTCCACTGCCAAACCACAAGGCATTGTGTGCCAACCTGCTCTCAGTGCCCAGCAGTACATGGACTACGTCAAGGCTCAAGTCTctGACACCAAACGTAAAGTGGAGCAGATCTCAGAGGAGCTCAGAAACCTGGATGAAATTCTGTCCAAGGATGACAAGAACAAAGGTGTGCTGGATGACAGAACAGATGAGGAACCTGCAGTTAGCTCTGATGAGCCTCCAGTTTCCAAGGCCCAAAAAAAAGAGGGTGAAGTTGCTGAGAAGTCGACGAGTGAAGAGCCAGAGGACAAAGACTTCTGGGAAGGAGTTACCAAACCAGCACACACAAAGCCAAGCACACCTGACACAGAGACCCCTCAGGAGCCACAGGACAACCAATTACATGAAAATGATTTATTTGGAGAGGAAAAGTTTAACTTTAAAATCATCACAGACCCCGCAGACCTCATGAAGTTTGTACAACACCTCAGAGAGAGCAACGAAAAGAACAGGAAAGCTGAGCTGGAAAAAGAAAACCAGCAAGCATCTCAGAAGAGGAAGGAGAAGGAGGAAAAAATAGAGGAGAAAACAGCAGAGGTGGAGGTGGAAGTTGAGGATGTAGATGAAGATGAAACATTGCTTCAGGAGTTTGAGGATGAGATGCAAGATCTATCCGTTCCCTCGTCCAAGATAGAAGAAATAAAAGAAGAGATGCAGAAAGAGTTTGACAACATCATAGAGGAAGCTCAGCAGGAGTTAGAAAATGAAGGCCTTAAGGGTGAGTTTGATCGTTCTCAGGCTACGCAAACTCTAGAAAATACACTAGGGAAACTTCTGGACCGTCTTGAAGACAAGACTGAACATAAGAGTCAAGCAGAAACAgaacaaaatgcagaaatggatAAAAGCACACATTCACCGCATAAAACAGAGGGAGGCTCTTCTTCTGGCAACCCAAATCTGGTTCCCAAAACACCAGCGGACAGCAGCGGCGGCGGCGAGCAGGTAAAAGTCAGGGTGACTAAGTATAAGGTGGGCGGAGGTGTGGCTGCAGGAGCGGTTACCGGGGGCAacgatgatggtgatgatgatgagggGGGTGTGAAGGTGCAGGAACTGGGCGAGGGCGACCCCCAGTGGCAGCAGATTCATGAAGTGGTCAAAGAGCAGCTAGAGAGAGCCGGCATCAAGGCCGAAGGAAAGATCGAGGTGAAGATTTTAACCCGTAAAACAGCCGAAGAAGCAGGAGACCAGTGGCTCTCTGAGGAGGATACGAAATCATTTAGAGAGCTTCTCATCAACCTTCTGACAGGAGGAACAGAGGAGGTGTACAAAGAGCAGAAAAGACAGCAAGAGTTGGAAAACAATTACAAATTTGTCTGGGGAGAAAAGCAGGATGAGAGTCAGTCCACAGGAAACAGTGATTCTGACGAAGCAGACTTTTGAGCCTTTTCCTCATCTCTCAAGCACTGTTATTTTGAAGAAGGCCAGCCAGCATTCTCTGAACTATAAGCCTGGTAATCACTTTACAGTGTGCGTCGCAACCAAACTGCCCTCTCAGACCATTCGAGTTCATGTTTAAAAACTTTTGAGGGCTTCAATCCACTGCCGGGAATTTTTTCTGTATGAGCGTCTGTGAGTTGTTTGTAGCTTGTCAGAATATTATGTGGTCGCTTCTTTGAACAAATATACAAATGCACTTCA
>TCONS_00064161
GACAACGCTTGTTTGCGATATGAGAGAACTATGGCTTCCTCCTTGATTAAGTGGTTAAGAGGATTATATGTGTTTTTCTTAACATGTCTCCTGTCTGTCTTTGCCTTTTTGAATCTAGAAGAATTAAACGAAATGAAATATGGCATACAGATTCTCCCCGATCCTGTTATCATGGGACAGATGGAAGATGTAATGTTGGTCTCTAACAAATACAAGCAGCTGTATGAGTGTCGTTTACCAGCTCAGGCAGTGCGTTTCCATCAGGACCCGGTGTCAGAGCCTGATGTGCAGGGTTACAGCGGCCCCGGGGTCCCTGAGCTCCTCAAGCCCATGCAGACGGCAGCATGTCTGATTAAGACCAAAGACTGGTGGACCTATGAGTTCTGCTACGGCCAGCACATCAGACAATACCACTTAGAAGATTCGGAGATCAAGGGAGATGTACTGTTTTTGGGATATTATGATACAGAGTTTGACTGGACGAATGAAACTGCAAAGgcATCTAAGCAGCATAAGCTGAAGAGGTATCACAGTCAGTCATATGTCAATGGCTCAAAATGTGACTTAAACGGCAGTCCCAGAGAGACGGAAGTCAGATTTGTGTGTGAGGAAGGCTCTACTGACTTCATTTCACGGGTGGATGAACCCCAGTCTTGCCGCTACGTCTTGACAGTCCACACCTCTCGCACGTGCCAGCATCCCCTTCTGCGCCCACCGTCCACTGCCAAACCACAAGGCATTGTGTGCCAACCTGCTCTCAGTGCCCAGCAGTACATGGACTACGTCAAGGCTCAAGTCTctGACACCAAACGTAAAGTGGAGCAGATCTCAGAGGAGCTCAGAAACCTGGATGAAATTCTGTCCAAGGATGACAAGAACAAAGGTGTGCTGGATGACAGAACAGATGAGGAACCTGCAGTTAGCTCTGATGAGCCTCCAGTTTCCAAGGCCCAAAAAAAAGAGGGTGAAGTTGCTGAGAAGTCGACGAGTGAAGAGCCAGAGGACAAAGACTTCTGGGAAGGAGTTACCAAACCAGCACACACAAAGCCAAGCACACCTGACACAGAGTATTTGGAGAGGAAAAGTTTAACTTTAAAATCATCACAGACCCCGCAGACCTCATGAAGTTTGTACAACACCTCAGAGAGAGCAACGAAAAGAACAGGAAAGCTGAGCTGGAAAAAGAAAACCAGCAAGCATCTCAGAAGAGGAAGGAGAAGGAGGAAAAAATAGAGGAGAAAACAGCAGAGGTGGAGGTGGAAGTTGAGGATGTAGATGAAGATGAAACATTGCTTCAGGAGTTTGAGGATGAGATGCAAGATCTATCCGTTCCCTCGTCCAAGATAGAA
>TCONS_00064162
GACAACGCTTGTTTGCGATATGAGAGAACTATGGCTTCCTCCTTGATTAAGTGATGGAAGATGTAATGTTGGTCTCTAACAAATACAAGCAGCTGTATGAGTGTCGTTTACCAGCTCAGGCAGTGCGTTTCCATCAGGACCCGGTGTCAGAGCCTGATGTGCAGGGTTACAGCGGCCCCGGGGTCCCTGAGCTCCTCAAGCCCATGCAGACGGCAGCATGTCTGATTAAGACCAAAGACTGGTGGACCTATGAGTTCTGCTACGGCCAGCACATCAGACAATACCACTTAGAAGATTCGGAGATCAAGGGAGATGTACTGTTTTTGGGATATTATGATACAGAGTTTGACTGGACGAATGAAACTGCAAAGgcATCTAAGCAGCATAAGCTGAAGAGGTATCACAGTCAGTCATATGTCAATGGCTCAAAATGTGACTTAAACGGCAGTCCCAGAGAGACGGAAGTCAGATTTGTGTGTGAGGAAGGCTCTACTGACTTCATTTCACGGGTGGATGAACCCCAGTCTTGCCGCTACGTCTTGACAGTCCACACCTCTCGCACGTGCCAGCATCCCCTTCTGCGCCCACCGTCCACTGCCAAACCACAAGGCATTGTGTGCCAACCTGCTCTCAGTGCCCAGCAGTACATGGACTACGTCAAGGCTCAAGTCTctGACACCAAACGTAAAGTGGAGCAGATCTCAGAGGAGCTCAGAAACCTGGATGAAATTCTGTCCAAGGATGACAAGAACAAAGGTGTGCTGGATGACAGAACAGATGAGGAACCTGCAGTTAGCTCTGATGAGCCTCCAGTTTCCAAGGCCCAAAAAAAAG
>TCONS_00064163
GACAACGCTTGTTTGCGATATGAGAGAACTATGGCTTCCTCCTTGATTAAGTGGTTAAGAGGATTATATGTGTTTTTCTTAACATGTCTCCTGTCTGTCTTTGCCTTTTTGAATCTAGAAGAATTAAACGAAATGAAATATGGCATACAGATTCTCCCCGATCCTGTTATCATGGGACAGATGGAAGATGTAATGTTGGTCTCTAACAAATACAAGCAGCTGTATGAGTGTCGTTTACCAGCTCAGGCAGTGCGTTTCCATCAGGACCCGGTGTCAGAGCCTGATGTGCAGGGTTACAGCGGCCCCGGGGTCCCTGAGCTCCTCAAGCCCATGCAGACGGCAGCATGTCTGATTAAGACCAAAGACTGGTGGACCTATGAGTTCTGCTACGGCCAGCACATCAGACAATACCACTTAGAAGATTCGGAGATCAAGGGAGATGTACTGTTTTTGGGATATTATGATACAGAGTTTGACTGGACGAATGAAACTGCAAAGgcATCTAAGCAGCATAAGCTGAAGAGGTATCACAGTCAGTCATATGTCAATGGCTCAAAATGTGACTTAAACGGCAGTCCCAGAGAGACGGAAGTCAGAGTAAGATACTAAGTGCCATATTCCAGACTATAGAGAAAAATAATGAAGAAAGAGTATTATTGAAGTCAGTCTAATGgctaacaataaacaataaggACAC

Function

symbol description
os9 Predicted to be involved in retrograde protein transport, ER to cytosol and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human OS9 (OS9 endoplasmic reticulum lectin).

GO:

id name namespace
GO:0030970 retrograde protein transport, ER to cytosol biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-060929-32 Predicted to be involved in retrograde protein transport, ER to cytosol and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human OS9 (OS9 endoplasmic reticulum lectin).

Ensembl:

ensembl_id ENSDARG00000020301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064160 False 2419 mRNA 0.47 15 39202685 39218609
TCONS_00064161 False 1349 lncRNA 0.47 10 39208854 39218590
TCONS_00064162 False 834 processed_transcript 0.50 7 39213261 39218590
TCONS_00064163 True 697 lncRNA 0.43 5 39215201 39218590

Neighbor

gene id symbol gene type direction distance location
XLOC_033018 c1galt1b coding downstream 3615 39190402 ~ 39199070 (-)
XLOC_033017 apof coding downstream 34953 39162294 ~ 39167732 (-)
XLOC_033016 stat2 coding downstream 42263 39123544 ~ 39160422 (-)
XLOC_033015 eif4bb coding downstream 121984 39064824 ~ 39080701 (-)
XLOC_033014 tns2b coding downstream 151366 39039480 ~ 39051319 (-)
XLOC_033020 arhgef25b coding upstream 37561 39256170 ~ 39275915 (-)
XLOC_033021 krt4 coding upstream 89889 39308498 ~ 39313027 (-)
XLOC_033022 zgc:158846 coding upstream 118122 39336731 ~ 39344259 (-)
XLOC_033023 scn8ab coding upstream 173833 39392442 ~ 39489190 (-)
XLOC_033024 NA coding upstream 273237 39491846 ~ 39521832 (-)
XLOC_033009 NA non-coding downstream 438359 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 non-coding downstream 604901 38597669 ~ 38597784 (-)
XLOC_033006 CR407584.1 non-coding downstream 844605 38132511 ~ 38358080 (-)
XLOC_033003 BX322552.1 non-coding downstream 1587202 37615366 ~ 37615483 (-)
XLOC_032997 BX324166.3 non-coding downstream 1755542 37447028 ~ 37447143 (-)
XLOC_033025 CU467856.1 non-coding upstream 306315 39524924 ~ 39525505 (-)
XLOC_033038 NA non-coding upstream 820083 40038692 ~ 40044111 (-)
XLOC_033043 NA non-coding upstream 954619 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 1164815 40383424 ~ 40409125 (-)

Expression


Co-expression Network