G1403245


Basic Information

Item Value
gene id G1403245
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67348443 ~ 67354726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1602527
TTGATGGTTTCATTGAACCAATCCATCAGGGAGCTGTGACGACAAGACTAATAACATGATCCAAGGCAATCTTACCAGTTGATGAACGAAATGTTGCATTACAGAAGCAGAACTTATAGAACCCTATATCATAATGATAagtcacagaacagaacagtagtatcagtaatgacaggaggaactgaacagaacagaacagaacagaacagtagtatcagtaatgacaggaggaactgaacagtagtagcagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtaacagtaatgactggaggaacagaacagtagtatcagtaatgacaggaggaactgaacagaacagaacagtagtaacagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtatcagtaatgactggaggaacagaacagtagtatcagtaatgacaggaggaactgaacagaacagaacagtagtaacagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtaacagtaatgacaggaggaactgaacagaacagtagtagcagtaatgacaggaggaacagaacagtagtaacagtaatgacaggaggaactgaacagtagtaacagtaatgacaggaggaactgaacagtagtaacagtaatgacaggaggaactgaacagtagtaacagtaatgacaggaggaactgaacagtagtatcagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtagcagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaactgaacagtagtaacagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaactgaacagtagtatcagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtaacagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaGCAGGAACtgaacagtagtagcagtaatgacaggaggaactgaacagtagtatcagtaatgacaggaggaacagaacagaacagaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaactgaacagtagtatcagtaatgacaggaggaactgaacagtagtatcagtaatgacaggaggaactgaacagaacagaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtaacagtaatgacaggaggaacagaacagtagtaacagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaacagaacagaac
>TU1602526
cagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtaacagtaatgacaggaggaactgaacagtagtatcagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaacagaacagtagtatcagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaggaggaactgaacagaacagtagtatcagtaatgacaggaggaacagaacagaacagtagtatcagtaatgacaagaggaacagaacagtagtaacagtaatgacaggaggaacagaacagaacagtagtatcagtaatgacaggaggaacagaacagaacagtagtatcagtaatgacaggaggaacagaacagaacagtagtaacagtaatgacaggaggaacagaacagaacagtagtaacagtaatgacaggaggaacagaacagaacagtagtatcagtaatgacaggaggaacagaacagaacagtagtaacagtaatgacaggaggaacagaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1602527 False 1540 lncRNA 0.41 3 67348443 67354109
TU1602526 True 624 lncRNA 0.41 3 67350040 67354726

Neighbor

gene id symbol gene type direction distance location
LOC110492590 LOC106566489 coding upstream 72702 67260049 ~ 67275741 (+)
LOC110492589 kcnd1 coding upstream 96816 67171830 ~ 67251627 (+)
LOC118939477 NA coding upstream 201080 67133110 ~ 67147363 (+)
LOC110492587 gripap1 coding upstream 219617 67034399 ~ 67128826 (+)
bcap31 bcap31 coding upstream 622027 66703053 ~ 66726416 (+)
pim1 LOC106566482 coding downstream 44135 67398861 ~ 67402310 (+)
LOC110492593 LOC105017353 coding downstream 104552 67459278 ~ 67476876 (+)
LOC110492619 LOC106566466 coding downstream 920769 68275495 ~ 68279289 (+)
LOC110492620 NA coding downstream 946302 68301028 ~ 68345013 (+)
LOC110491164 LOC106566465 coding downstream 994047 68348773 ~ 68357169 (+)
G1403232 NA non-coding upstream 8494 67339620 ~ 67339949 (+)
G1403228 NA non-coding upstream 11289 67336911 ~ 67337154 (+)
G1403184 NA non-coding upstream 46483 67301708 ~ 67301960 (+)
G1403167 NA non-coding upstream 65446 67282718 ~ 67282997 (+)
G1403158 NA non-coding upstream 70382 67277747 ~ 67278061 (+)
G1403255 NA non-coding downstream 5226 67359952 ~ 67360357 (+)
G1403308 NA non-coding downstream 61271 67415997 ~ 67420314 (+)
G1403313 NA non-coding downstream 74013 67428739 ~ 67429903 (+)
G1403317 NA non-coding downstream 84157 67438883 ~ 67439198 (+)
G1403328 NA non-coding downstream 126944 67481670 ~ 67528492 (+)
G1402256 NA other upstream 433727 66914365 ~ 66914716 (+)
G1402066 NA other upstream 804758 66543311 ~ 66543685 (+)
G1401782 NA other upstream 1324198 66019001 ~ 66024245 (+)
G1401354 NA other upstream 1451380 65895891 ~ 65897063 (+)
G1401074 NA other upstream 2089599 65258515 ~ 65258844 (+)
G1403412 LOC106566473 other downstream 298342 67653068 ~ 67653447 (+)
G1403463 NA other downstream 384236 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 418830 67773293 ~ 67777491 (+)
G1404105 NA other downstream 934789 68289515 ~ 68290086 (+)

Expression


Co-expression Network