XLOC_033020 (arhgef25b)


Basic Information

Item Value
gene id XLOC_033020
gene name arhgef25b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39256170 ~ 39275915 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064164
AGAATGTGTGTCAGTGATTCAGAAAAAGCTGAGTGTGGATTAAACTGGACAGTACAGGACAGTAGAGAAGACAAAACACAACAATCAGCTATTTTCCGCCATTCATCTGGAGACAGAGAAAGATGAAGAGTTTGGCCAAACTTCAAGGCAACACAGAGCAACTTCTGATGTCTTTATCAAACACCCTCCCATCTTTGACCCTAAATAACCAGCAATGGATCCAGGAACAAAATGAAGGGTGTCTTTTACTGGAAGAAAAACAGGGTTGTTCAAAGAAGGGTGCAGGACCggaaaatgaaaaacaaagctGGAACCAAAGACTCGAACACATACCTGAGGACAAAGacTCGTACACGTTAACTGGGCTCAGTGATGTCTCCTTGCCTCCAGATGATCCTCCTTCAGCCTCTGTCTCCACTGATGACCTTTCTCCAATCTCTCCCAGCAACCATCAGCTTTTTTCCAGCAGACGAGCATCTGTCACATCCACCCGCTCCATCAAGGCCTTCAAGAGGTGGCTGAGCAGCCCGGTTCGAAGGCTGAGTTTGGGAGGAGGAAACAAGAGTCAGAGTTCAAAGGGAATTCAGAGCCCAGAAGGGTCAACCTACATGTTTCTTCCTCTCTCACCTGCTCAAAGCCCATTGAGCCCAATGGAGAAGTCCCAAAAACTGACCCGCTCCTACAGATCTCTGGACTGTGGTGAACTTTCTAGAGAAACATCTCCTGACAGTCCCTATTACCCAAGATACCTCAATGATCTCTTTCAGAGAAATCAGTCTTTTGATGTTCAAACTAGTGTCAGTCCATCTTTGACTGACAAAACACTTGTAGAACAATCGCAGAGCCTGGAGGACAATGAGCAACACAGAAGAACCGCTTTAGAAAAAAGCATATATGTGCTGACAGAGCTGGTAGAAACGGAGAAGCTGTATGTGGAAGATCTGGGGCTTGTTGTTGAGGGTTATATGCTTACAATGAGAAGTTTTGGAGTGCCCGAGTATTTGGAAGGAAAGGACAAAATAGTCTTTGGGAACATTCATCAGATCTACGACTGGCATAAAGACTATTTTCTTGGAGAGTTGGAGAAATGTGTGTCTGAACCCGACCTGCTAGCACAGCTGTTTATTAAACATGAGAGACGGCTCAACATGTATGTTGTCTACTGTCAGAACATGCCAAAGTCAGAGCACATCGTCTCAGAGTACATCGAAACTTATTTTGAGGATCTGAGGCAACAGCTGGGTCACAGACTGCAGTTAAATGACCTGCTCATCAAACCCGTTCAGAGAATCATGAAATATCAGCTGCTGCTGAAGGACTTCCTGAAGTACTACACTAAAGCGGGCAGACAAACAGAAGATCTTGAGAGGGCCGTTGAGGTCATGTGTTTTGTTCCAAAGCGATGCAATGACATGATGAATGTTGGACGACTGCAGGGTTTTGAGGGTCAGCTGAGAGCACAAGGGAAACTCCTGCAACAGGACACCTTCACATTCATTGAGAACGAGAACAGCATCCTCTCACGTCCCAAAGAGAGACGAGTGTTTCTTTTCGAGCAGCTCATCATCCTCAGTGAGCCAATGGACCGCAAGAGAGGCTTTTCCCTGCCAGGATACGTCTATAAAAACAGCATCAAGATCAGTTGTTTATCCATTGAGGATCGCTGCCCAGAAGACCCCTGTCGGCTGGTGCTGACATCTCGTAATATAGATGGAAGTTTGCAAAAATTCATTCTCCGTGCATCCTCCTCAGAGATCAGAACGTCCTGGGCAAACGACATCATACAGATGCTAGAGACACAGCGCAACTTTTTAAACGCCCTGCAGTCTCCTATCGAATTCCAGAGGAAAGAAATCAAATCCCTCAGTCTGGGAAAGAGCATGACAGCATCAGCCTCACTGAACTCTGGCCTGCGACCCTACAGCTCTGCTTCTATAGACCGTCAGACTCTGCCCTGCCTGCAGTCCTGGCATTCCTCACAACCCTCGACGCCTCCCTGAAAGCTTTCTGTTGGTCCTGCAGAGGCACTTTTTCATCTTCCTTCGCACTCAAGATAAAGCAAGACCATTTTACATTACCTGTGTCCAGAAAAAGACTGAATGGAGGAGGTTAAATTATTCATTTCTAATGATTTATAATGTGACTTAAAAGTTATACGATAATAAGTCATGTACTGTAAAGTTCAGGTATATGCATACATGAATTCTTGTAAAAAGAATTgttcttttcttctttcactc
>TCONS_00064165
ATGAAGAGTTTGGCCAAACTTCAAGGCAACACAGAGCAACTTCTGATGTCTTTATCAAACACCCTCCCATCTTTGACCCTAAATAACCAGCAATGGATCCAGGAACAAAATGAAGGGTGTCTTTTACTGGAAGAAAAACAGGGTTGTTCAAAGAAGGGTGCAGGACCggaaaatgaaaaacaaagctGGAACCAAAGACTCGAACACATACCTGAGGACAAAGacTCGTACACGTTAACTGGGCTCAGTGATGTCTCCTTGCCTCCAGATGATCCTCCTTCAGCCTCTGTCTCCACTGATGACCTTTCTCCAATCTCTCCCAGCAACCATCAGCTTTTTTCCAGCAGACGAGCATCTGTCACATCCACCCGCTCCATCAAGGCCTTCAAGAGGTGGCTGAGCAGCCCGGTTCGAAGGCTGAGTTTGGGAGGAGGAAACAAGAGTCAGAGTTCAAAGGGAATTCAGAGCCCAGAAGGGTCAACCTACATGTTTCTTCCTCTCTCACCTGCTCAAAGCCCATTGAGCCCAATGGAGAAGTCCCAAAAACTGACCCGCTCCTACAGATCTCTGGACTGTGGTGAACTTTCTAGAGAAACATCTCCTGACAGTCCCTATTACCCAAGATACCTCAATGATCTCTTTCAGAGAAATCAGTCTTTTGATGTTCAAACTAGTGTCAGTCCATCTTTGACTGACAAAACACTTGTAGAACAATCGCAGAGCCTGGAGGACAATGAGCAACACAGAAGAACCGCTTTAGAAAAAAGCATATATGTGCTGACAGAGCTGGTAGAAACGGAGAAGCTGTATGTGGAAGATCTGGGGCTTGTTGTTGAGGGTTATATGCTTACAATGAGAAGTTTTGGAGTGCCCGAGTATTTGGAAGGAAAGGACAAAATAGTCTTTGGGAACATTCATCAGATCTACGACTGGCATAAAGACTATTTTCTTGGAGAGTTGGAGAAATGTGTGTCTGAACCCGACCTGCTAGCACAGCTGTTTATTAAACATGAGAGACGGCTCAACATGTATGTTGTCTACTGTCAGAACATGCCAAAGTCAGAGCACATCGTCTCAGAGTACATCGAAACTTATTTTGAGGATCTGAGGCAACAGCTGGGTCACAGACTGCAGTTAAATGACCTGCTCATCAAACCCGTTCAGAGAATCATGAAATATCAGCTGCTGCTGAAGGACTTCCTGAAGTACTACACTAAAGCGGGCAGACAAACAGAAGATCTTGAGAGGGCCGTTGAGGTCATGTGTTTTGTTCCAAAGCGATGCAATGACATGATGAATGTTGGACGACTGCAGGGTTTTGAGGGTCAGCTGAGAGCACAAGGGAAACTCCTGCAACAGGACACCTTCACATTCATTGAGAACGAGAACAGCATCCTCTCACGTCCCAAAGAGAGACGAGTGTTTCTTTTCGAGCAGCTCATCATCCTCAGTGAGCCAATGGACCGCAAGAGAGGCTTTTCCCTGCCAGGATACGTCTATAAAAACAGCATCAAGATCAGTTGTTTATCCATTGAGGATCGCTGCCCAGAAGACCCCTGTCGGCTGGTGCTGACATCTCGTAATATAGATGGAAGTTTGCAAAAATTCATTCTCCGTGCATCCTCCTCAGAGATCAGAACGTCCTGGGCAAACGACATCATACAGATGCTAGAGACACAGCGCAACTTTTTAAACGCCCTGCAGTCTCCTATCGAATTCCAGAGGAAAGAAATCAAATCCCTCAGTCTGGGAAAGAGCATGACAGCATCAGCCTCACTGAACTCTGGCCTGCGACCCTACAGCTCTGCTTCTATAGACCGTCAGACTCTGCCCTGCCTGCAGTCCTGGCATTCCTCACAACCCTCGACGCCTCCCTGA
>TCONS_00064166
CTGATATGAAGGGGCATCGTGGCCCACGGGTATGTGGCTGTTCACCCTTCTGTTGGAAGGTTTTGGCCAGGTGCGTGTGTTGCTTCAATCAGAAAGacTCGTACACGTTAACTGGGCTCAGTGATGTCTCCTTGCCTCCAGATGATCCTCCTTCAGCCTCTGTCTCCACTGATGACCTTTCTCCAATCTCTCCCAGCAACCATCAGCTTTTTTCCAGCAGACGAGCATCTGTCACATCCACCCGCTCCATCAAGGCCTTCAAGAGGTGGCTGAGCAGCCCGGTTCGAAGGCTGAGTTTGGGAGGAGGAAACAAGAGTCAGAGTTCAAAGGGAATTCAGAGCCCAGAAGGGTCAACCTACATGTTTCTTCCTCTCTCACCTGCTCAAAGCCCATTGAGCCCAATGGAGAAGTCCCAAAAACTGACCCGCTCCTACAGATCTCTGGACTGTGGTGAACTTTCTAGAGAAACATCTCCTGACAGTCCCTATTACCCAAGATACCTCAATGATCTCTTTCAGAGAAATCAGTCTTTTGATGTTCAAACTAGTGTCAGTCCATCTTTGACTGACAAAACACTTGTAGAACAATCGCAGAGCCTGGAGGACAATGAGCAACACAGAAGAACCGCTTTAGAAAAAAGCATATATGTGCTGACAGAGCTGGTAGAAACGGAGAAGCTGTATGTGGAAGATCTGGGGCTTGTTGTTGAGGTTACA

Function

symbol description
arhgef25b Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within regulation of Rho protein signal transduction. Is expressed in ball; epidermis; extension; median fin fold; and periderm. Orthologous to human ARHGEF25 (Rho guanine nucleotide exchange factor 25).

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080225-17 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within regulation of Rho protein signal transduction. Is expressed in ball; epidermis; extension; median fin fold; and periderm. Orthologous to human ARHGEF25 (Rho guanine nucleotide exchange factor 25).

Ensembl:

ensembl_id ENSDARG00000014465

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064164 False 2240 mRNA 0.45 16 39256170 39275915
TCONS_00064165 False 1878 mRNA 0.47 15 39258560 39275793
TCONS_00064166 True 716 mRNA 0.49 5 39267046 39270851

Neighbor

gene id symbol gene type direction distance location
XLOC_033019 os9 coding downstream 37561 39202685 ~ 39218609 (-)
XLOC_033018 c1galt1b coding downstream 57100 39190402 ~ 39199070 (-)
XLOC_033017 apof coding downstream 88438 39162294 ~ 39167732 (-)
XLOC_033016 stat2 coding downstream 95748 39123544 ~ 39160422 (-)
XLOC_033015 eif4bb coding downstream 175469 39064824 ~ 39080701 (-)
XLOC_033021 krt4 coding upstream 32583 39308498 ~ 39313027 (-)
XLOC_033022 zgc:158846 coding upstream 60816 39336731 ~ 39344259 (-)
XLOC_033023 scn8ab coding upstream 116527 39392442 ~ 39489190 (-)
XLOC_033024 NA coding upstream 215931 39491846 ~ 39521832 (-)
XLOC_033025 CU467856.1 coding upstream 249009 39524924 ~ 39525505 (-)
XLOC_033009 NA non-coding downstream 491844 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 non-coding downstream 658386 38597669 ~ 38597784 (-)
XLOC_033006 CR407584.1 non-coding downstream 898090 38132511 ~ 38358080 (-)
XLOC_033003 BX322552.1 non-coding downstream 1640687 37615366 ~ 37615483 (-)
XLOC_032997 BX324166.3 non-coding downstream 1809027 37447028 ~ 37447143 (-)
XLOC_033038 NA non-coding upstream 762777 40038692 ~ 40044111 (-)
XLOC_033043 NA non-coding upstream 897313 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 1107509 40383424 ~ 40409125 (-)

Expression


Co-expression Network