XLOC_033022 (zgc:158846)


Basic Information

Item Value
gene id XLOC_033022
gene name zgc:158846
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39336731 ~ 39344259 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064168
CATATCTTGAAAATTGTTTCTTGACCAATAAGCTGGCCTTGAGCCACTCCCTGCACTCGATATAAGAGTTTGAAGGAACGTGTGTCGTCCCACCACTTTTGAGTTTCCATCCCCTCAACTCCTGGTCCTCTGACAGCTGTTTTGTCCAGAGATGCAGAGCTCGAAGAAAACTGTTAAGACTTTTAGCAGTCACTCCTCTGTTGGAGTGAGCAGCAACAGACGGACACCCCTGTCCCGTTCAGGGATGGTTTCGAGAGAAGGTTGGGGCTCCAGTCCAGTCCTTTACCCTTCGATTACAGCTGTAAAGGTCAACGAAAGTCTTCTGGCACCCCTAAACCTGGACATCGACCCGAGCATCCAGGCCATCAAGACTCAAGAGAAGGAACAGATCAAGACACTTAACAACCGCTTTGCTTCATTCATTGACAAAGTACGCTATCTAGAACAACAGAACAAGATGCTGGAAACTAAGTGGAGTGTCCTGCAGGAACAGACCAGTCGACAGTCCAACATTGATATGATGTTTGAGGGCTACATTGCTGGTCTGCGTAGACAGTTGGACAGTTTAGGTAATGAGAAGCAGCGCCTGGAGTCTGGCCTGCGAGACATGAACACACTCGTTGAAGACTTTAAGAGCAAGTATGAAGATGAAATTAATAAACGAAGCGATTCTGACAACGAATTTGTGCTTCTTAAAAAGAATGCTGATGATTCATACCTGAGTAAAGTGGAGCTGGATTGTAAATTGGATGCCCTTTCAGAGGAGATCAACTTCCTTTGGCAGATTTACGAGGCGGAACTCCATGAGCTCCAGACTCAGATCAAGGACACTTCAGTTGTTGTAGAAATGGACAACAGCAGGAATCTGGACATGGAATCTATCGTGGCTGAAGTTCGTGCTCAGTATGAGGAAATCGCCAGCCGCAGCCGTGCAGAAGCAGAGAGCTGGTACCAACAAAAGTATGAAGAAATGCAGTTGACCGCAACCAAACATGGAGATGACCTGAAAAACTCCAAGGCAGAAATCTCAGAGTACAACCGAAGAATTGCACGTATTCATTCTGAGATGGAGCTCATTAAGGGACAGTTCTCAAACCATGAAGCACAGATCAAAGAGGCAGAAGAACGTGGTGAACTGGCCGTGAAAGATGCCAGGCTGCGTCTGCAGGAGCTGGAAGCTGCTCTTCTGAGGGCTAAACAGGACATGGCCCGACAGGTGCGCGAGTACCAGTCACTGATGAACATCAAACTGGCTCTGGACATTGAGATCGCCACCTATAGGAAACTCCTGGAAGGGGAAGAAAGCAGACTGTATACATCATACCAGACACACTACATCACTAAACCAGGCCCACTCAACTACGATCTTGAAAGCAGCTTTGTAGGAGTATCATCCCAAAATGCCACAAAGGATATTCATAACACAGGCCTGGTTAAGCAGGAGGTGGTGGTTAATAAGGGTGGCAGCTCTAGCAGCCTTACCACCGTCACCAAAAGCACAAAGACCACTGTCGTCACCAGTGAGATGGGGAAGACTCTTGTGTCCACAGGGGGAAGTGTGCAGGTGATGGATAAATCTGCAGTCAAAGAACTGGAGGATGTTTTTAACTGATGGGAGGAAAGATTAAAGTGTATTGCACAGGATCCAGGATTAGATTTTTTATAGGTTGCCTTTCTCCCACTCAACAGTGAGCATGTCCAGTTTGTTGTTAAGGTTTGACATATAAAACTGATAACAAGACATACTAAAGATGTAgtatatttttaaagaatatctGATGTTTGCTTGTTTCCTTTGATTAAATGGTTACTAAATATCTGTTAATGAGAACAGTTAAACAAAAAGGGGGACACCGTTTGAGCACTTTTCTGACTATTAAGGACTGTATTCAAATAAAGTGCGTACCACAAATCAAA

Function

symbol description
zgc:158846 Predicted to be located in keratin filament. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT7 (keratin 7); KRT79 (keratin 79); and KRT8 (keratin 8).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0045095 keratin filament cellular_component
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-50 Predicted to be located in keratin filament. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT7 (keratin 7); KRT79 (keratin 79); and KRT8 (keratin 8).

Ensembl:

ensembl_id ENSDARG00000058462

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064168 True 1917 mRNA 0.45 9 39336731 39344259

Neighbor

gene id symbol gene type direction distance location
XLOC_033021 krt4 coding downstream 23704 39308498 ~ 39313027 (-)
XLOC_033020 arhgef25b coding downstream 60816 39256170 ~ 39275915 (-)
XLOC_033019 os9 coding downstream 118122 39202685 ~ 39218609 (-)
XLOC_033018 c1galt1b coding downstream 137661 39190402 ~ 39199070 (-)
XLOC_033017 apof coding downstream 168999 39162294 ~ 39167732 (-)
XLOC_033023 scn8ab coding upstream 48183 39392442 ~ 39489190 (-)
XLOC_033024 NA coding upstream 147587 39491846 ~ 39521832 (-)
XLOC_033025 CU467856.1 coding upstream 180665 39524924 ~ 39525505 (-)
XLOC_033026 dip2bb coding upstream 186876 39531135 ~ 39605734 (-)
XLOC_033027 atf7b coding upstream 269098 39613357 ~ 39631181 (-)
XLOC_033009 NA non-coding downstream 572405 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 non-coding downstream 738947 38597669 ~ 38597784 (-)
XLOC_033006 CR407584.1 non-coding downstream 978651 38132511 ~ 38358080 (-)
XLOC_033003 BX322552.1 non-coding downstream 1721248 37615366 ~ 37615483 (-)
XLOC_032997 BX324166.3 non-coding downstream 1889588 37447028 ~ 37447143 (-)
XLOC_033038 NA non-coding upstream 694433 40038692 ~ 40044111 (-)
XLOC_033043 NA non-coding upstream 828969 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 1039165 40383424 ~ 40409125 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G490645 NA unknown CI01000340 null 9038812 ~ 9043101 (+)