G1403445 (LOC106566473)


Basic Information

Item Value
gene id G1403445
gene name LOC106566473
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67699226 ~ 67699591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1602751
AGAGCCCCTTAGAGGGGGTGGACCTCCCGCTGCTGTCAGGGTCCTGGGCGGGGGGCATAGGGTAGGCCTGGTTAGGTAGGGCTGCGCGGcggccctcccctcctcctccccctctctgggGCTTGATGGGGCCCCTCAGACCCGTCTCAGAGCTCCTCTTCATGGCCTGTAGCTGGGCCAGGGGCACGATGTCGCAGGCCTGGGGCCGGTGCCACACCGTCTGCTGACTGGCACTGTTGTAGTAGTAGAAGCGTTTGTTGTGGCTGTCAAACAGCTCCCACCACTGGCTGCCATCGGACTGGCGCACGGCGGCGCCTGGGGGGGGCTCCCAACCACACTCCCCCGAGGCCAGGTTCACGTACATGC

Function

NR:

description
rho GTPase-activating protein 39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1602751 True 366 lncRNA 0.67 1 67699226 67699591

Neighbor

gene id symbol gene type direction distance location
LOC110492593 LOC105017353 coding upstream 225533 67459278 ~ 67476876 (+)
pim1 LOC106566482 coding upstream 296916 67398861 ~ 67402310 (+)
LOC110492590 LOC106566489 coding upstream 423485 67260049 ~ 67275741 (+)
LOC110492589 kcnd1 coding upstream 447599 67171830 ~ 67251627 (+)
LOC118939477 NA coding upstream 551863 67133110 ~ 67147363 (+)
LOC110492619 LOC106566466 coding downstream 575904 68275495 ~ 68279289 (+)
LOC110492620 NA coding downstream 601437 68301028 ~ 68345013 (+)
LOC110491164 LOC106566465 coding downstream 649182 68348773 ~ 68357169 (+)
LOC110492622 LOC100380652 coding downstream 697171 68396762 ~ 68405191 (+)
LOC110492623 LOC106566463 coding downstream 722522 68422113 ~ 68431744 (+)
G1403444 NA non-coding upstream 397 67698532 ~ 67698829 (+)
G1403443 NA non-coding upstream 1170 67697840 ~ 67698056 (+)
G1403439 NA non-coding upstream 7756 67691266 ~ 67691470 (+)
G1403438 NA non-coding upstream 8380 67690573 ~ 67690846 (+)
G1403435 NA non-coding upstream 12767 67686196 ~ 67686459 (+)
G1403447 NA non-coding downstream 5185 67704776 ~ 67706284 (+)
G1403460 NA non-coding downstream 33740 67733331 ~ 67733625 (+)
G1403461 NA non-coding downstream 34969 67734560 ~ 67734899 (+)
G1403471 NA non-coding downstream 71322 67770913 ~ 67771172 (+)
G1403472 NA non-coding downstream 72203 67771794 ~ 67772429 (+)
G1403412 LOC106566473 other upstream 45779 67653068 ~ 67653447 (+)
G1402256 NA other upstream 784510 66914365 ~ 66914716 (+)
G1402066 NA other upstream 1155541 66543311 ~ 66543685 (+)
G1401782 NA other upstream 1674981 66019001 ~ 66024245 (+)
G1403463 NA other downstream 39371 67738962 ~ 67739702 (+)
G1403655 LOC106566486 other downstream 73965 67773293 ~ 67777491 (+)
G1404105 NA other downstream 589924 68289515 ~ 68290086 (+)
G1404281 LOC106566460 other downstream 981855 68681446 ~ 68681977 (+)

Expression


Co-expression Network