G1403655 (LOC106566486)


Basic Information

Item Value
gene id G1403655
gene name LOC106566486
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 67773293 ~ 67777491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1602990
GGCATTCAACACTTTATTCACAAACTAGTTACAGCTATCAACTGTTCACTGGAAACCAAAATATATGCACGATAAACCCATGGAACTACACAAGGCATCGTTATGATAAAACCCTCTCTGTTTTGTTCACATACAGTAGTCCATTTCAAAGTGCTAATAAAAAGTACTGTTGCTTATTTTTTTCAGGGGGAGAAGGGACTTGTTTTGCCTCGTACAATATAGTACAAAAttattgtggggggggggggggggggggggggttcggtTTCCTGGTAAATTGAGGGTGGAAAGATTCCTTCTGCTCAAGGGTATTCACATCAGATGACTACTTACAGGTGTGAAGCATCGTTGCAgtgtagggcggcaggtagcctagcagttagaacATTTGACCAGTAACCCCAAGGTCGATATTTTGAATCCCCGTGaaaacaaggtgaaaaatctgttgatctgCACATGAGCAAGTCACTCAACCCAAATTGCTCCAGGGTCACGGTCAATAATGACAGATCCCTGGCCACGAACCCACTGTCAGGGGGAGTAAGGATATGCCAAATTCCCATTTCCAAACTTGTACAAGTTACCCACTTGTACATGcagtgaaacaggacaaatataagcacccacgaTTTGACCCTTTTGATGAAGCGCTGTCTGATAGGTAATATCTGtttattataaaatatattttaacattTACATTAATCGCAAAAAACCTACATTCAAATACACACAGCAATTTTACATGTATGTTGAGACCCCAATAGCACCATGTATAGCGAACAAATCTACTGTTATAAAGAATGCAGCATTTGTTAACTACATGTACTGTTCCATGTATTTTTATTTCTAAGAGAAACACGTGTAACTACAGTCTTTAGACCATGAAGTTATGGCCGATCGTGACTGTGTGGGCTTGTTTTACAAGCCAGCATGTTCTGAGTATCTCTAAGTGGTATTAGGCAGAATAAACTGCCAGGGTTGCTGTATAAGGTGAGTGGGTCATGAAACCTATGTCCCGCCCATCTCTGGGACACATCGGCTTGCAAAACAAGCACACCTTTTCTCTCTGAAGCCTTTGATGACATCAGAGAGAGGTAGTGGGGCACGTTCCTCTGCCCAGCCATTGGATAGTTATTTTACATATCAGCCAACCATATCATATGTCCTAGCAATCTGGTGCCCGACAGCACAGTCGATGACCTGGCACACAACCATTGCAACACAATACATGCAACAACGTCTTAGCAGGGGAACTCAACTGTGGACTGATGACTTCATGAAACAGACTTCCTGGATGAACCAACCAGACTAGACAAGTCAGGTTTACACATAGAGATGTATAAGGATCATTACATAGAAATAACACGTTTttgcatggacattgccattggggGCTTCCAGGCATTTTACAGTAGTCAACTGTGTAGAGATTCGTATGGGGTTGGGAGCGATCAGCCAATAAGCAGAGCATTGTCTTCTTCTTTAAAATGGTTTGCCTAGTTTGTAAATGGCTTCAAGCTATGtgactgccatctagtggccacaatAAATGAATGACACTAAATTTGGTTCAGGACTCCAGCACTGCAGGAGGCGATAAGACACCTATA
>TU1602989
ggtTTCCTGGTAAATTGAGGGTGGAAAGATTCCTTCTGCTCAAGGGTATTCACATCAGATGACTACTTACAGGTGTGAAGCATCGTTGCAgtgtagggcggcaggtagcctagcagttagaacATTTGACCAGTAACCCCAAGGTCGATATTTTGAATCCCCGTGaaaacaaggtgaaaaatctgttgatctgCACATGAGCAAGTCACTCAACCCAAATTGCTCCAGGGTCACGGTCAATAATGACAGATCCCTGGCCACGAACCCACTGTCAGGGGGAGTAAGGATATGCCAAATTCCCATTTCCAAACTTGTACAAGTTACCCACTTGTACATGcagtgaaacaggacaaatataagcacccacgaTTTGACCCTTTTGATGAAGCGCTGTCTGATAGGTAATATCTGtttattataaaatatattttaacattTACATTAATCGCAAAAAACCTACATTCAAATACACACAGCAATTTTACATGTATGTTGAGACCCCAATAGCACCATGTATAGCGAACAAATCTACTGTTATAAAGAATGCAGCATTTGTTAACTACATGTACTGTTCCATGTATTTTTATTTCTAAGAGAAACACGTGTAACTACAGTCTTTAGACCATGAAGTTATGGCCGATCGTGACTGTGTGGGCTTGTTTTACAAGCCAGCATGTTCTGAGTATCTCTAAGTGGTATTAGGCAGAATAAACTGCCAGGGTTGCTGTATAAGGTGAGTGGGTCATGAAACCTATGTCCCGCCCATCTCTGGGACACATCGGCTTGCAAAACAAGCACACCTTTTCTCTCTGAAGCCTTTGATGACATCAGAGAGAGGTAGTGGGGCACGTTCCTCTGCCCAGCCATTGGATAGTTATTTTACATATCAGCCAACCATATCATATGTCCTAGCAATCTGGTGCCCGACAGCACAGTCGATGACCTGGCACACAACCATTGCAACACAATACATGCAACAACGTCTTAGCAGGGGAACTCAACTGTGGACTGATGACTTCATGAAACAGACTTCCTGGATGAACCAACCAGACTAGACAAGTCAGGTTTACACATAGAGATGTATAAGGATCATTACATAGAAATAACACGTTTttgcatggacattgccattggggGCTTCCAGGCATTTTACAGTAGTCAACTGTGTAGAGATTCGTATGGGGTTGGGAGCGATCAGCCAATAAGCAGAGCATTGTCTTCTTCTTTAAAATGGTTTGCCTAGTTTGTAAATGGCTTCAAGCTATGtgactgccatctagtggccacaatAAATGAATGACACTAAATTTGGTTCAGGACTCCAGCACTGCAGGAGGCGATAAGACACCTATATTagtttacacttttttttttatctaaagaAGGAAGAAAAGGGACTATTTTAAAATGGAAATGGCTTCAGTGGTGCTGGCCATACTGTCACAGACACCATAATGGGACAGCTACAATGTTGTGACCTCTATACGTCTCAGTGGGTTCACATCAGATAAGTGCCTTCGATTGCATGTTTTCTGATTGGACTCTCTCAAAACGGTTAATGCCACAGCTACCAAGTTGTTAGCGGTAGATATATTTTCAGTAAAAACTCTTATTCTGTTCAACATCCAGAACTCAGTCATTTTGAAATGAAAATAAGAACACAACAAAAGGGAATGCTTTGATTCACATAAATATCAAGTCTCTTGTTTTTCATTACAAACATAGTAGAACTAAAATAAGCTGCAACACTGAAAATATACGGCACTTAGATGACACTCCCAGTTCCTACCTgcactccaaccctaaccacgGCCTCCTCGTGTCGGTTTGACGCCAAACTCAAAGGCAAGTTCCACAGCACTCacagtgtgtgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatcactgaACCTCATAATTGATCATCTGCATTTTGTGGAATTAAGTGTTTTCAAAAATGAATTAGTAACACATTGGTTAAAAAAAAGCCTTAATCAATGTGCCACATACACGTAATCAGCACAGGGGGGTGGAACCAGCACCAATTCATACACCCATTAGTAAAAACAAACAAAGTCAAATACACATATAGAATACACAATATTTTTTTCAAAGAATCCAATGAATATCAAAAATCAATCAAGTTTATTTTCCTCTCATATTCCCAAAGCTccccaaaaacaaaaaacaaagcaaAGTAACATCCTGCCATAGGAAAATAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCACTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTTCTGCTGTGTTCGCTCATAAAGAATCATGGGCTGCTGCTGTGTTCGTTCATAAAGAATCAtgggctgctgctgctgtgttcGTTCATAAAGAATCAtgggctgctgctgctgtgttcGCTCATAAAGAATCATGGGCTGCTGCTGTGTTCGTTCATAAAGAATCATGGGCTGCTGCTGTGTTCGTTCATAAAGAATCTCCTGGTGAAGTCCGTTGATGTATTACAGGAAGGGGCCAGCAGTGGGCCGTCTGCTGGCCTGGGATATGGTTGGGGCACTGGAGGACTGCAGTCTTGATTAAAGGGACAGGCTCGTCCCCATATCAGCCAGGAAGTGCTGCTGTggcctgaggaggaggagggtgagaatTTAAGCGGGTCTGGGTGGGGGACAGGCCAGAGGTGACATTGTGCTGATTCAGTCTCCCTAAAATCTCaggtgaggaggggagacagagtgagagaggggtctTACAGGCAGTCATACAGGCAACCCGTTCTCAGCTTCCTGAACAAAGTCACTGCACTGACAGTGAGCATGGTTCAGCCTCCACCGGGCCGACCGTCTCCTAAacaactcttcctcctcctcttcatcacccCTATCCCTGCCCTCCTCATCCTCGTCATGCAGTCTAGGCGGGCCCTCCTCCCCTAACTGgttgaggagaggtggggagtggTCCCAGTCTGAGCGGCCCTCCTCAGCTGGGActggaggacaggaagaggaggaggaggaggaggaagagcggTGCTCCCCTCCATTCAGCCCCAACGCCTCCCTCAGGACCTCGGCCGCAGCCTCTCTCAGCAGGAGAGCTGGAGTGGCCAGGGTGGTCAGGTAGATGGCTGAGGCTGATTGGTCCGTTGAGGATACCAGGGCGTggtctcttcctcctctaccctccccagGAATCAAGTTGCTGCTGCGCCCGTTCGGCTGGTGGTTGAAGTTGCCTAGCATCGTGAACATCCTGTCCACGGTCCAGTCAAAGTTGTCCCAGTCCTCCAGGCTGACGTTGAAGTTGAGTTTGAGATCATACGCGTGCTTGTCAAGTCTGTACAAGGGTTCAAGTTCTGACCAGTCCATTCCCGTTCCTCCTGCACTGGGTGCTTCTGACGGGGCCACTGTCGCCTCCTGGACCCTATCCCTCCCAGCCTTCCCAAATCTGTCCTCTGATGAGACAAGATCACACAGACAAAACAGTGTCATCCACAGCAAACCTCT

Function

NR:

description
extracellular sulfatase Sulf-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1602990 False 1616 lncRNA 0.43 1 67773293 67774908
TU1602989 True 3936 TUCP 0.46 1 67773556 67777491

Neighbor

gene id symbol gene type direction distance location
LOC110492593 LOC105017353 coding upstream 299600 67459278 ~ 67476876 (+)
pim1 LOC106566482 coding upstream 370983 67398861 ~ 67402310 (+)
LOC110492590 LOC106566489 coding upstream 497552 67260049 ~ 67275741 (+)
LOC110492589 kcnd1 coding upstream 521666 67171830 ~ 67251627 (+)
LOC118939477 NA coding upstream 625930 67133110 ~ 67147363 (+)
LOC110492619 LOC106566466 coding downstream 500587 68275495 ~ 68279289 (+)
LOC110492620 NA coding downstream 526120 68301028 ~ 68345013 (+)
LOC110491164 LOC106566465 coding downstream 573865 68348773 ~ 68357169 (+)
LOC110492622 LOC100380652 coding downstream 621854 68396762 ~ 68405191 (+)
LOC110492623 LOC106566463 coding downstream 647205 68422113 ~ 68431744 (+)
G1403472 NA non-coding upstream 864 67771794 ~ 67772429 (+)
G1403471 NA non-coding upstream 2121 67770913 ~ 67771172 (+)
G1403461 NA non-coding upstream 38394 67734560 ~ 67734899 (+)
G1403460 NA non-coding upstream 39668 67733331 ~ 67733625 (+)
G1403447 NA non-coding upstream 67009 67704776 ~ 67706284 (+)
G1403669 NA non-coding downstream 37908 67812816 ~ 67813737 (+)
G1403692 NA non-coding downstream 91389 67866297 ~ 67868121 (+)
G1403716 NA non-coding downstream 136802 67911710 ~ 67911910 (+)
G1403720 NA non-coding downstream 143262 67918170 ~ 67918456 (+)
G1403749 NA non-coding downstream 205715 67980623 ~ 67981028 (+)
G1403463 NA other upstream 33591 67738962 ~ 67739702 (+)
G1403412 LOC106566473 other upstream 119846 67653068 ~ 67653447 (+)
G1402256 NA other upstream 858577 66914365 ~ 66914716 (+)
G1402066 NA other upstream 1229608 66543311 ~ 66543685 (+)
G1404105 NA other downstream 514607 68289515 ~ 68290086 (+)
G1404281 LOC106566460 other downstream 906538 68681446 ~ 68681977 (+)
G1404700 NA other downstream 1334806 69109714 ~ 69113350 (+)
G1404785 NA other downstream 1470637 69245545 ~ 69253709 (+)

Expression


Co-expression Network