G1403948


Basic Information

Item Value
gene id G1403948
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68044287 ~ 68045398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1603316
tcccacaataagttgggggaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttactcgcacacacttttttagttctaggtactagtccaacgctctaaccactagactaccctgccgccccactgatctgttactccctgtatatagctccacattgatctggtactccctgtatatagatccacattgatctggtactccctgtatagagcacCATattaatctggtactggtactccctgtatatagctccacattgatctggtactccctgtatatagctccacattgatctggtactccctgtatatagctccacattgatctagtgctccctgtatatagctccacattgatctggttctccctgtatatagctccacattgatctggtactggtacttcctgtatatagctccacattgatctggttctccctgtatatagctccacattgatctggtactggtacttcctgtatatatctccacattgatattgtactggtacttcctgtatatagctccacattgatattgtactggtacttcctgtatatatctccacattgatattgtactggtacttcctgtatatagctccacattgatctggtgctcGCTGTATATAGTtgcattcttgtgtattttaaactttgcattgttgggaagggatcGTAAgcaacatttcacggtaaagtctacaacaattgtatttggcgcatttgacaaatacaattttatggGAATGGGGATGGGGAATGCAATGTTTCTGTGATGACGTGCTCAGAACATAAGATTACAAACCAGAAAACAAAAGTTTGTCTTTTACAAATGGATTTAGGAGTGCATGGTGTTCACAAAGAATGTAGTACACATTGGCATTAAGTGTGCCTGTGGGAAGGAATTAGCCCTGGGCAGGAAATATCTGATTGGTATCTTCAACCTTTCCCTGACACTGTAGCTCCACAGTAAAGAACCAACTATGCTTTGCCTGTACTGGGGATGCACTGAACAATGAACAGTGCATtgggaaggtattcagaccccttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1603316 True 1080 lncRNA 0.42 2 68044287 68045398

Neighbor

gene id symbol gene type direction distance location
LOC110491155 LOC106572085 coding downstream 3746 67773270 ~ 68040541 (-)
LOC110491154 LOC106566473 coding downstream 271707 67608824 ~ 67772580 (-)
LOC118939572 NA coding downstream 439321 67573165 ~ 67604966 (-)
LOC110492595 LOC106566479 coding downstream 473200 67512498 ~ 67571087 (-)
LOC110492594 LOC106566480 coding downstream 534143 67499665 ~ 67510144 (-)
LOC118939464 NA coding upstream 115409 68160807 ~ 68163967 (-)
LOC110492614 LOC106566471 coding upstream 124628 68170026 ~ 68176211 (-)
id1 id1 coding upstream 137827 68183225 ~ 68184419 (-)
LOC110492616 LOC106566469 coding upstream 203647 68249045 ~ 68265361 (-)
LOC110492615 LOC106566468 coding upstream 220039 68265437 ~ 68272147 (-)
G1403873 NA non-coding downstream 129746 67913252 ~ 67914541 (-)
G1403872 NA non-coding downstream 131264 67912679 ~ 67913023 (-)
G1403863 NA non-coding downstream 150133 67893003 ~ 67894154 (-)
G1403815 NA non-coding downstream 258603 67784320 ~ 67785684 (-)
G1403966 NA non-coding upstream 33257 68078655 ~ 68146780 (-)
G1403981 NA non-coding upstream 67535 68112933 ~ 68113638 (-)
G1403991 NA non-coding upstream 95303 68140701 ~ 68142315 (-)
G1403994 NA non-coding upstream 101903 68147301 ~ 68147511 (-)
G1403999 NA non-coding upstream 105916 68151314 ~ 68151627 (-)
G1403498 NA other downstream 600108 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 1549620 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 1617965 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 2289677 65715711 ~ 65754610 (-)
G1401617 NA other downstream 2407915 65635482 ~ 65636372 (-)
LOC118939478 LOC106566484 other upstream 745791 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 1157888 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 1232429 69277827 ~ 69280359 (-)
G1405172 NA other upstream 1472357 69517755 ~ 69518113 (-)
G1405917 NA other upstream 2033259 70078657 ~ 70095541 (-)

Expression


Co-expression Network