G1404059


Basic Information

Item Value
gene id G1404059
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68213291 ~ 68214106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1603443
TTTCAGTGATTATTAGTGAACTGGACCCAGTCaataaactgtatgaatgtagtgattattagtgaactggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgaactggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtag
>TU1603445
TTTCAGTGATTATTAGTGAACTGGACCCAGTCaataaactgtatgaatgtagtgattattagtgaacGACCCAGTCaataaactgtatgaatgtagtgattattagtgaactggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtag
>TU1603446
TTTCAGTGATTATTAGTGAACTGGACCCAGTCaataaactgtatgaatgtagtgattattagtgaactggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagTGATTATTAGTGAACTGGACCCAGTCaataaactgtatgaatgtagtgattattagtgaactggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtagtgattattagtgagctggacccagtcaataaactgtatgaatgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1603443 False 512 lncRNA 0.36 2 68213291 68214106
TU1603445 False 326 lncRNA 0.36 2 68213291 68214106
TU1603446 True 558 lncRNA 0.36 2 68213291 68214106

Neighbor

gene id symbol gene type direction distance location
id1 id1 coding downstream 28872 68183225 ~ 68184419 (-)
LOC110492614 LOC106566471 coding downstream 37080 68170026 ~ 68176211 (-)
LOC118939464 NA coding downstream 49324 68160807 ~ 68163967 (-)
LOC110491155 LOC106572085 coding downstream 172750 67773270 ~ 68040541 (-)
LOC110491154 LOC106566473 coding downstream 440711 67608824 ~ 67772580 (-)
LOC110492616 LOC106566469 coding upstream 34939 68249045 ~ 68265361 (-)
LOC110492615 LOC106566468 coding upstream 51331 68265437 ~ 68272147 (-)
LOC110492618 LOC106566485 coding upstream 65248 68279354 ~ 68336936 (-)
LOC110492621 LOC106566464 coding upstream 149068 68363174 ~ 68367397 (-)
LOC110491166 NA coding upstream 155889 68369995 ~ 68383908 (-)
G1404035 NA non-coding downstream 23029 68190025 ~ 68190262 (-)
G1404031 NA non-coding downstream 27651 68185359 ~ 68185640 (-)
G1404017 NA non-coding downstream 58824 68154260 ~ 68154467 (-)
G1404016 NA non-coding downstream 59979 68153096 ~ 68153312 (-)
G1403999 NA non-coding downstream 61664 68151314 ~ 68151627 (-)
G1404061 NA non-coding upstream 1912 68216018 ~ 68216248 (-)
G1404348 NA non-coding upstream 67886 68281992 ~ 68335689 (-)
G1404367 NA non-coding upstream 111625 68325731 ~ 68326012 (-)
G1404368 NA non-coding upstream 113540 68327646 ~ 68327903 (-)
G1404373 NA non-coding upstream 120435 68334541 ~ 68334953 (-)
G1403498 NA other downstream 769112 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 1718624 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 1786969 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 2458681 65715711 ~ 65754610 (-)
G1401617 NA other downstream 2576919 65635482 ~ 65636372 (-)
LOC118939478 LOC106566484 other upstream 577083 68791189 ~ 68795025 (-)
G1404974 LOC106566438 other upstream 989180 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 1063721 69277827 ~ 69280359 (-)
G1405172 NA other upstream 1303649 69517755 ~ 69518113 (-)
G1405917 NA other upstream 1864551 70078657 ~ 70095541 (-)

Expression


Co-expression Network