XLOC_033029 (pfdn5)


Basic Information

Item Value
gene id XLOC_033029
gene name pfdn5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39661588 ~ 39666722 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064184
cctttttttttaaggtaatgtTAATACATGCTGTATAAATGCACTGTTAGTTTATTTAGTCGACGTTTTATTTGTTAAAGTATAACAAATGACTGTAGTGTGTAATGGAAAAAAATCAATGGTAAAAGTCCTTTTAGTTGCGTCCGCTTGACCCGGAAGTTTTCCTCACcctcttttattgtcaacatgGCGGTGAATCTCACTGAATTGTCTCTTCCACAATTAGAAGGCTTGAAAACTCAGCTTGATCAgGAAACAGAGTTCCTGTCATCGTCTATAGCTCAGCTGAAAGTCGTCCAAACAAAATATGTGGAGGCCAAAGACAGTTTGAATGTGCTTAACAAGAGCAATGAAGGTAAAGAACTACTCGTCCCTCTCACCAGTTCTATGTATGTACCTGGAAAGCTGCATGATGTGGATCATGTGTTAGTGGATGTGGGAACAGGTTATTTTGTGGAGAAGAATGTAGAGGACGGCAAAGAGTTCTTTAAACGCAAAATCGACTTCCTTACTAAACAAATTGAAAAGATTCAGCCTGCTCTTCAAGAAAAATATGCCATGAAACAAGCTGTTGTGGAAGTGATGAATATGAAACTTCAGCAACTACACAGTCAACAGGCATCACAGTCTGGCACCACCAAAGCCTAAAGACGGTTAAAAGAAGCATGGCAGAAAATATAGATCCCAAGCCTTCAACATTCAGATGGATCCTTTCTGATCTCTTGAAATGGAGAACTGCTGCTCTGATGTCAACATGTTGTTCACATCTCGTTGGGGGAGAATAAAGTCCAGCACTTTGTCTACTTTAAAcaaatattctttttttctgtgcCATGTTTTTCTTCTCATGTATAGTGAAGAAATGGAGCATTGGGCACGGCCGATGGCTGTATCCACAAAACCTCCCTTCACTGGGATTAATGTCTTTGGAGGAGATTTACTTTGTGGCACAATGTAGCTTTGTGGTAAACACTTGGCATGGATTGTTTTAAATGCAGCAAATATTTACACATGAAACCtgttaaaaatgttcttgctggGCTAAAAGTGCACCCAAATTCTCaagcaaaataatgaaaaattgaTATCAAGAATGGCTTGATTTGTTGTCCCAAGCAGATGAGTTACTGGTCAGTGTTACAGAGAGCAGCAACTTTATGACTACTGTAATATGCTTATGTACAATTTTTCCACCCatgctaaaaaataaacaataaaaattgacatttaaaatct
>TCONS_00064185
GAATTGTCTCTTCCACAATTAGAAGGCTTGAAAACTCAGCTTGATCAgGAAACAGAGTTCCTGTCATCGTCTATAGCTCAGCTGAAAGTCGTCCAAACAAAATATGTGGAGGCCAAAGACAGTTTGAATGTGCTTAACAAGAGCAATGAAGGTGacttttaaaactcttttatgACGTTTTTAGCTAAATCTGAcgtttgctaatttttttttactttttctctcAGGTAAAGAACTACTCGTCCCTCTCACCAGTTCTATGTATGTACCTGGAAAGCTGCATGATGTGGATCATGTGTTAGTGGATGTGGGAACAGGTTATTTTGTGGAGAAGAATGTAGAGGACGGCAAAGAGTTCTTTAAACGCAAAATCGACTTCCTTACTAAACAAATTGAAAAGATTCAGCCTGCTCTTCAAGAAAAATATGCCATGAAACAAGCTGTTGTGGAAGTGATGAATATGAAACTTCAGCAACTACACAGTCAACAGGCATCACAGTCTGGCACCACCAAAGCCTAAAGACGGTTAAAAGAAGCATGGCAGAAAATATAGATCCCAAGCCTTCAACATTCAGATGGATCCTTTCTGATCTCTTGAAATGGAGAACTGCTGCTCTGATGTCAACATGTTGTTCACATCTCGTTGGGGGAGAATAAAGTCCAGCACTTTGTCTACTTTAA
>TCONS_00064186
ATCTCACTGAATTGTCTCTTCCACAATTAGAAGGCTTGAAAACTCAGCTTGATCAgGAAACAGAGTTCCTGTCATCGTCTATAGCTCAGCTGAAAGTCGTCCAAACAAAATATGTGGAGGCCAAAGACAGTTTGAATGTGCTTAACAAGAGCAATGAAGGTAAAGAACTACTCGTCCCTCTCACCAGTTCTGTATCCTCTAAACAGCTGAGTTATAAATGAGTTCTGATTGATTTATGCCACATAAGAAAGTCACACAGACAGTTTGATGTGTGTGTAATTAATTTGCAGTGGTCCGTTATTCCCTTAACCTCAGTCATGTAGATGTATGTACCTGGAAAGCTGCATGATGTGGATCATGTGTTAGTGGATGTGGGAACAGGTTATTTTGTGGAGAAGAATGTAGAGGACGGCAAAGAGTTCTTTAAACGCAAAATCGACTTCCTTACTAAACAAATTGAAAAGATTCAGCCTGCTCTTCAAGAAAAATATGCCATGAAACAAGCTGTTGTGGAAGTGATGAATATGAAACTTCAGCAACTACACAGTCAACAGGCATCACAGTCTGGCACCACCAAAGCCTAAAGACGGTTAAAAGAAGCATGGCAGAAAATATAGATCCCAAGCCTTCAACATTCAGATGGATCCTTTCTGATCTCTTGAAATGGAGAACTGCTGCTCTGAT

Function

symbol description
pfdn5 Predicted to enable unfolded protein binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN5 (prefoldin subunit 5).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-6858 Predicted to enable unfolded protein binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN5 (prefoldin subunit 5).

Ensembl:

ensembl_id ENSDARG00000035043

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064184 False 1236 mRNA 0.38 6 39661588 39666722
TCONS_00064185 False 681 lncRNA 0.40 5 39662015 39666518
TCONS_00064186 True 684 lncRNA 0.40 5 39662076 39666526

Neighbor

gene id symbol gene type direction distance location
XLOC_033028 larp4ab coding downstream 7616 39633065 ~ 39653972 (-)
XLOC_033027 atf7b coding downstream 30407 39613357 ~ 39631181 (-)
XLOC_033026 dip2bb coding downstream 55854 39531135 ~ 39605734 (-)
XLOC_033025 CU467856.1 coding downstream 136083 39524924 ~ 39525505 (-)
XLOC_033024 NA coding downstream 139756 39491846 ~ 39521832 (-)
XLOC_033030 espl1 coding upstream 2128 39668850 ~ 39700965 (-)
XLOC_033031 itgb7 coding upstream 36510 39703232 ~ 39727244 (-)
XLOC_033032 pfkmb coding upstream 70686 39737408 ~ 39765546 (-)
XLOC_033033 myl6 coding upstream 207455 39874177 ~ 39893526 (-)
XLOC_033034 tsfm coding upstream 230821 39897543 ~ 39903431 (-)
XLOC_033009 NA non-coding downstream 897262 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 non-coding downstream 1063804 38597669 ~ 38597784 (-)
XLOC_033006 CR407584.1 non-coding downstream 1303508 38132511 ~ 38358080 (-)
XLOC_033038 NA non-coding upstream 371970 40038692 ~ 40044111 (-)
XLOC_033043 NA non-coding upstream 506506 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 716702 40383424 ~ 40409125 (-)
XLOC_033052 NA non-coding upstream 810708 40477430 ~ 40482198 (-)
XLOC_033055 CU855953.1 non-coding upstream 958582 40625304 ~ 40625420 (-)

Expression


Co-expression Network