G1404256 (LOC106566462)


Basic Information

Item Value
gene id G1404256
gene name LOC106566462
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68619563 ~ 68621847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1603685
TGATGCCCATGGAGGGCTGTCCCAGGCTGGCCCTCCTCTCCCACTTGCCCTCGTCAGGGTTGTAGACCTCCACGGAGGACAGGGGGCTCTGCTGGAGGTCCATGCCCCCCATCACCATCACCTGACCCCCCAGGGCCACCGCCGACGCCCCCGCCCGGGCTGTAGGGAGCGGAGGAAGCTGGGTCCATGTCTGGCTCTCTATGTCCAGCACCTCAGCAGTATCTAAAGGCAGGCCTGTTTCATTGCATCCTCCCAGAACATAGAGCAGGCCACCGTGGAACACAGGGGTGCAGTAGACCCTGCATgaggacatgggggggaacacCTCCCAGTACAGGGACTTGACAGGGCTCACTGCCATCTCAAGTACAGGCATCTCTCCTGAGGCTGGCAGTGGTGGTGGGTCATTACAACACGGATGGGGTGGGGCGGGGGGATaaaaaacagacaaacaaaaacaacaaagacagaagcaggggCACTGCGGAACAGCCTCCTTTCTTGCTGCGCTGCTACATGATGCCCTGTCTGAAACGAGAGAgggcgtgagagagagaaagagagagagagagagagagagagagagagggagggacagagagatagacggggggagggacagagagagagagagggagtgtgacagagagagagagaaagagcgagagagtgacagagagagggagagagagagagagagagggggagggactaCCTCAGCAATCTGCCAGatgcctccactccactccaccaaaTGATTTATTCATTTATTACTGATCTTTTAGTGCAGGGGACCATCTGCCCTTTCTTTCCCTGTATTCACTCCATCCAAGGGCTTTTTATTTTGGTTAAAAATCACTGCAGTTGATTAGTGTGTGCTACTCTCCAGGGAGGAATATGTTTTGTGAAGGCTTCCTGTGGCGAACACACTTAAAAGGTGTGCCTGGCTTTATGCATAATCCCTGTGAAACGTTATTGTCAAGTGGGAGATTGAGTAAAATCATAAAACTGGGGAGTAAAATGAACCTGTGATCACGTTCTCAGCCAAAGGCAATTATCATGGGCTCCAGCTACTATATGAATCGGGTGAAGAGGGTAATGACAAAACGAAGAAAAACCAAACAAAGTCTTTAAATGAAAACTCTTGAGTATAATGGGAACAAGCTCTCGGGGTCAGACAGAATCTTTCTAATCAGACCAAAACGCTAAATCCCAGAAGGCAGCTGTCAACGGTCAACTGGGGCTGAAGAGTACCGTCTGTCCCACTTGGACACAGCGAGGCTCCCACAGAGATACCTGGCCTGTGTAGAAGAAGAGAAAACAGCCAGGCCTCTGACCCTGTGGAAGATTCAGCCGTGGACAGCCAGCGCTGTGACATTTACAGTCAGGGCCAGGCCAGGAGGTCCAGGGGGGAGGTAGAGATCTGGAACAGCACGACCCACTCCAAAGGTCACTGCTTCCACTGGGACTTTCAGGAATCGGATCACACTGACAGAAAGTGTCATTGGCGCACAAGCATTGTTAATTATTTAAACGGAGAGAGTACGTGACAGGAATGGGTGTTGTGGAAGGAGAGGTAAATAAAAGGTATAGGGAAGAGAAGTGAAAAAAGAGGGAGATACAAGTTTTTAAAAAGatagagggggggagacaggaaAAGACAGGTATGGGTAGATGTAGAGAGATCCTTAGAGACACGCTGGTGCGAGGCTACTGGAGTCTGAGTCCATCTAAAACAGCTATGATGAGAATGCAGGGAGTAGTTTGTCGACTCGGAGAGAGCGGACACACAGATATCTCAAATGAGATCCCCTGGTGTGTTTACAGAATGAGGAGGCTCTATCAGAGGAAACCCCCCCGTCAGCTTCTGCACAGCCTTCACAGGTGTATCTTCCTCTTAGGATTTGTGTGTATCCATCTCGGACACACTCTGAACACTCCGGAACTCTGGGCCTTGTTGCTCAATTACAAGGTACCTACGTATTCCTGAACAGCACACTAGGTCTACGTGTTAGTTCAGTTGAGACATCATTAAACAAACAAATGAGCTGGAAACACAACGCCTTTTCAGCACTGCAGGCAAAACTGTTCGCCAGAGGTGAAAGCAAACTTTTTTCCCCCTTCGTCATCAGAGTCGGTGGATTAGAAATGCAGGAGGAGTGTTATAGAGACAGGACTTGTTTGTATTCCAGGAGCAGAACTCTGACTCTCCCACGGCGATCTCTTGTTGCTGTTACTCCGTGGCTGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1603685 True 2249 lncRNA 0.51 2 68619563 68621847

Neighbor

gene id symbol gene type direction distance location
LOC110492623 LOC106566463 coding upstream 187819 68422113 ~ 68431744 (+)
LOC110492622 LOC100380652 coding upstream 214372 68396762 ~ 68405191 (+)
LOC110491164 LOC106566465 coding upstream 262394 68348773 ~ 68357169 (+)
LOC110492620 NA coding upstream 274550 68301028 ~ 68345013 (+)
LOC110492619 LOC106566466 coding upstream 340274 68275495 ~ 68279289 (+)
LOC110492628 LOC106566456 coding downstream 282963 68904810 ~ 68909231 (+)
LOC110492629 LOC106566457 coding downstream 291040 68912887 ~ 68915383 (+)
LOC118939574 NA coding downstream 310286 68932133 ~ 68934318 (+)
LOC110492631 LOC106566454 coding downstream 335718 68957565 ~ 68961010 (+)
LOC110492632 LOC106566452 coding downstream 339900 68961747 ~ 68970217 (+)
G1404234 NA non-coding upstream 79806 68539477 ~ 68539757 (+)
G1404233 NA non-coding upstream 80413 68538941 ~ 68539150 (+)
G1404232 NA non-coding upstream 81224 68538131 ~ 68538339 (+)
G1404179 NA non-coding upstream 173032 68444379 ~ 68446531 (+)
G1404168 NA non-coding upstream 175708 68434512 ~ 68443855 (+)
G1404259 NA non-coding downstream 7602 68629449 ~ 68629652 (+)
G1404273 NA non-coding downstream 36506 68658353 ~ 68672602 (+)
G1404271 LOC106566460 non-coding downstream 54175 68676022 ~ 68678971 (+)
G1404280 LOC106566460 non-coding downstream 58178 68680025 ~ 68680497 (+)
G1404283 LOC106566460 non-coding downstream 61172 68683019 ~ 68686885 (+)
G1404105 NA other upstream 329477 68289515 ~ 68290086 (+)
G1403655 LOC106566486 other upstream 842072 67773293 ~ 67777491 (+)
G1403463 NA other upstream 879861 67738962 ~ 67739702 (+)
G1403412 LOC106566473 other upstream 966116 67653068 ~ 67653447 (+)
G1404281 LOC106566460 other downstream 59599 68681446 ~ 68681977 (+)
G1404700 NA other downstream 487867 69109714 ~ 69113350 (+)
G1404785 NA other downstream 623698 69245545 ~ 69253709 (+)
fkbp1ab LOC100705189 other downstream 683849 69305670 ~ 69312263 (+)
G1404827 NA other downstream 742674 69364521 ~ 69369376 (+)

Expression


Co-expression Network