XLOC_033033 (myl6)


Basic Information

Item Value
gene id XLOC_033033
gene name myl6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39874177 ~ 39893526 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064191
CGACCATACTGTAATTGACCAGCGCTCGGTCTGACGCGTTTCTGCTCCATCCTCAAACACTGCAGTCATGTCTGACTTCACGGAGGACCAGATTTGTGAATTTAAGGAGGCCTTCCTCCTGTTTGACCGAACAGGAGATGGGAAGATCATGTACAATCAGTGTGGGGATGTGATGCGAGCTCTCGGCCAGAACCCTGTCAATGCTGAGGTCCTTAAAGTCCTGGGCAACCCCAGTAATGAAGATATGAacatgaagatgctggactttgaGCAGTTTCTGCCAATGCTGCAGGCCATCGCTAAGAACAAGGATCAGGGCTCCTTTGAGGACTTTGTGGAGGGACTGCGGGTCTTTGACAAAGAGGGAAATGGGACGGTGATGGGTGCTGAGTTGCGACATGTCCTCACTACACTAGGTGAGAAGATGACAGAGGAAGAGGTGGAGACGCTCTTAGCAGGACACGAGGACGCTAACGGTTGCATCAATTATGAAGAACTCGTAAGGATGGTCATGAGCGGTTGAAGAATTCAGACACATTGATTTTTGTCCGTTATTTTCCCCCATTCATGTGATTCTTCATTTCCatatttgcttttttaattatttgttctttattttttccttaaGTGCCTTTTATCGTGTTTCTGGAGAATTATGGCTCATTTCATTTCAAAAACGTCAGTTGATCTCCAATTGGGTTTGCTCGAATACCTTCCATTCAGCCATTGCATTCATTCCACCCATCGCTGTACTCGTCCATTATTTGTCTTAAACTGTGAGGGCCCTTTTGATCGTCTCctaatgtatttttctttttaaatgatcatattgtCTAATTGTTTGTGTCATTTGACATCCCTCTTTATTGTCCGCTGTTCATCATAATAAATATTCAGATTGAAGTTTGA
>TCONS_00064192
CGGTGTAGCGGAGTGCGCGCGACCATACTGTAATTGACCAGCGCTCGGTCTGACGCGTTTCTGCTCCATCCTCAAACACTGCAGTCATGTCTGACTTCACGGAGGACCAGATTTGTGAATTTAAGGAGGCCTTCCTCCTGTTTGACCGAACAGGAGATGGGAAGATCATGTACAATCAGTGTGGGGATGTGATGCGAGCTCTCGGCCAGAACCCTGTCAATGCTGAGGTCCTTAAAGTCCTGGGCAACCCCAGTAATGAAGATATGAacatgaagatgctggactttgaGCAGTTTCTGCCAATGCTGCAGGCCATCGCTAAGAACAAGGATCAGGGCTCCTTTGAGGACTTTGTGGAGGGACTGCGGGTCTTTGACAAAGAGGGAAATGGGACGGTGATGGGTGCTGAGTTGCGACATGTCCTCACTACACTAGGTGAGAAGATGACAGAGGAAGAGGTGGAGACGCTCTTAGCAGGACACGAGGACGCTAACGGTTGCATCAATTATGAAGCATTTGTGCGCCACATTATGGCTGGTTGAGGAGAGGAACTCGTAAGGATGGTCATGAGCGGTTGAAGAATTCAGACACATTGATTTTTGTCCGTTATTTTCCCCCATTCATGTGATTCTTCATTTCCatatttgcttttttaattatttgttctttattttttccttaaGTGCCTTTTATCGTGTTTCTGGAGAATTATGGCTCATTTCATTTCAAAAACGTCAGTTGATCTCCAATTGGGTTTGCTCGAATACCTTCCATTCAGCCATTGCATTCATTCCACCCATCGCTGTACTCGTCCATTATTTGTCTTAAACTGTGAGGGCCCTTTTGATCGTCTCctaatgtatttttctttttaaatgatcatattgtCTAATTGTTTGTGTCATTTGACATCCCTCTTTATTGTCCGCTGTTCATCATAATAAATATTCAGATTGAA
>TCONS_00064193
AAATGTACTCGGGTCCACTTCAGATATTCCCACTGATTTAATCTACCTGTGTCTTTATCTTTTAcacttataattaaattataaagagATCTAGATTAAAACTGGATTAAGTTGAGAATTAAATAAGTGATCGTTGTGTGCGTTTTTACTCCTTAGATATGAacatgaagatgctggactttgaGCAGTTTCTGCCAATGCTGCAGGCCATCGCTAAGAACAAGGATCAGGGCTCCTTTGAGGACTTTGTGGAGGGACTGCGGGTCTTTGACAAAGAGGGAAATGGGACGGTGATGGGTGCTGAGTTGCGACATGTCCTCACTACACTAGGTGAGAAGATGACAGAGGAAGAGGTGGAGACGCTCTTAGCAGGACACGAGGACGCTAACGGTTGCATCAATTATGAAGAACTCGTAAGGATGGTCATGAGCGGTTGAAGAATTCAGACACATTGATTTTTGTCCGTTATTTTCCCCCATTCATGTGATTCTTCATTTCCatatttgcttttttaattatttgttctttattttttccttaaGTGCCTTTTATCGTGTTTCTGGAGAATTATGGCTCATTTCATTTCAAAAACGTCAGTTGATCTCCAATTGGGTTTGCTCGAATACCTTCCATTCAGCCATTGCATTCATTCCACCCATCGCTGTACTCGTCCATTATTTGTCTTAAACTGTGAGGGCCCTTTTGATCGTCTCctaatgtatttttctttttaaatgatcatattgtCTAATTGTTTGTGTCATTTGACATCCCTCTTTATTGTCCGCTGTTCATCATAATAAATATTCAGATT
>TCONS_00064194
CGGTGTAGCGGAGTGCGCGCGACCATACTGTAATTGACCAGCGCTCGGTCTGACGCGTTTCTGCTCCATCCTCAAACACTGCAGTCATGAATTTAAGGAGGCCTTCCTCCTGTTTGACCGAACAGGAGATGGGAAGATCATGTACAATCAGTGTGGGGATGTGATGCGAGCTCTCGGCCAGAACCCTGTCAATGCTGAGGTCCTTAAAGTCCTGGGCAACCCCAGTAATGAAGATATGAacatgaagatgctggactttgaGCAGTTTCTGCCAATGCTGCAGGCCATCGCTAAGAACAAGGATCAGGGCTCCTTTGAGGACTTTGTGGAGGGACTGCGGGTCTTTGACAAAGAGGGAAATGGGACGGTGATGGGTGCTGAGTTGCGACATGTCCTCACTACACTAGGTGAGAAGATGACAGAGGAAGAGGTGGAGACGCTCTTAGCAGGACACGAGGACGCTAACGGTTGCATCAATTATGAAGAACTCGTAAGGATGGTCATGAGCGGTTGAAGAATTCAGACACATTGATTTTTGTCCGTTATTTTCCCCCATTCATGTGATTCTTCATTTCCatatttgcttttttaattatttgttctttattttttccttaaGTGCCTTTTATCGTGTTTCTGGAGAATTATGGCTCATTTCATTTCAAAAACGTCAGTTGATCTCCAATTGGGTTTGCTCGAATACCTTCCATTCAGCCATTGCATTCATTCCACCCATCGCTGTACTCGTCCATTATTTGTCTTAAACTGTGAGGGCCCTTTTGATCGTCTCctaatgtatttttctttttaaatgatcatattgtCTAATTGTTTGTGTCATTTGACATCCCTCTTTATTGTCCGCTGTTCATCATAATAAATATTCAGATT
>TCONS_00064195
TACTGTAATTGACCAGCGCTCGGTCTGACGCGTTTCTGCTCCATCCTCAAACACTGCAGTCATGTCTGACTTCACGGAGGACCAGATTTGTGATATGAacatgaagatgctggactttgaGCAGTTTCTGCCAATGCTGCAGGCCATCGCTAAGAACAAGGATCAGGGCTCCTTTGAGGACTTTGTGGAGGGACTGCGGGTCTTTGACAAAGAGGGAAATGGGACGGTGATGGGTGCTGAGTTGCGACATGTCCTCACTACACTAGGTGAGAAGATGACAGAGGAAGAGGTGGAGACGCTCTTAGCAGGACACGAGGACGCTAACGGTTGCATCAATTATGAAGAACTCGTAAGGATGGTCATGAGCGGTTGAAGAATTCAGACACATTGATTTTTGTCCGTTATTTTCCCCCATTCATGTGATTCTTCATTTCCatatttgcttttttaattatttgttctttattttttccttaaGTGCCTTTTATCGTGTTTCTGGAGAATTATGGCTCATTTCATTTCAAAAACGTCAGTTGATCTCCAATTGGGTTTGCTCGAATACCTTCCATTCAGCCATTGCATTCATTCCACCCATCGCTGTACTCGTCCATTATT
>TCONS_00064196
CGGTGTAGCGGAGTGCGCGCGACCATACTGTAATTGACCAGCGCTCGGTCTGACGCGTTTCTGCTCCATCCTCAAACACTGCAGTCATGTCTGACTTCACGGAGGACCAGATTTGTGAATTTAAGGAGGCCTTCCTCCTGTTTGACCGAACAGGAGATGGGAAGATCATGTACAATCAGTGTGGGGATGTGATGCGAGCTCTCGGCCAGAACCCTGTCAATGCTGAGGTCCTTAAAGTCCTGGGCAACCCCAGTAATGAAGATATGAacatgaagatgctggactttgaGCAGTTTCTGCCAATGCTGCAGGCCATCGCTAAGAACAAGGATCAGGGCTCCTTTGAGGACTTTGTGGAGGGACTGCGGGTCTTTGACAAAGAGGGAAATGGGACGGTGATGGGTGCTGAGTTGCGACATGTCCTCACTACACTAGGTGAGAAGATGACAGAGGAAGAGGTGGAGACGCTCTTAGCAGGACACGAGGACGCTAACGGTTGCATCAATTATGAAGGTACAATAACACACAAGGTCTTTTTCTTCACTGAAGATCAAGACCACAGTTGTAGTGTCTGCGTTTAATCCATATGCCTTTCCTTCCGACAGCATTTGTGCGCCACATTATGGCTGGTTGAGGAGAGGGTACGAATAGTCCTCAGTTTGTTTTTATACATTCTTCTCTCCTGCAGCTCCCTCTGCGTCCCCTGGCTGTAGCCTAGCATGTAGCATTTCTGCATGTGCCTAGGTGTCTCCTGACTACTATTGCCTTTATTGAGGCTGTGCCGGCACTAACACTAGTGTAAAGCTCAGTCATGCCCAAACCAGTAACACCCCTTGAACTTTAATCAGTGAAGCTAATTACTTCTAGCATATTTAAAGTCTAAAATGGAACTAGGAAAGTGGATTCAGATGGTCCTTTCTAGAAACTCTTACAATACGCTCTTCTGTTACTTTAGTAGGCTTTGTAGGGAGGTGTATTGTTGATTCTAGTTTGCAGTCCTGTCACATTGCTGTTCCTGCTTTGTCTCTTTTCTGTACTTGTGTATTTAACTGTTCTCTCTACATGCCTTTATAAGGTATGCTAACTCATTTCTTTTAGGCCTGGACAATGTCTCTTCCTCCCCTTTCAAATCATCCAGGGGCTTTTGCATTACACCTCCTTTTAATGCAGGGAAATGTAGTTTGTCTGAACTACACCTACAGTCTATTTTTGCGCGTGATCTGATCTGTGACTGTTTATAAGTTTAAGTATGTTGATATTCATGGCTACATTTAGTCACCTTGGGATTATGAGGTTCTatcttacttttttttattttgtcaacttTGACGTTACACATTCCCACTCTggtaaattttatttacattatatatttgtttttgataagTTGTGAATAGTTTTGAGATTCTTAtatagaaagcaaaaaaggtACTTTCTGTAAAGTCAAACTGTTAACTTGGTTGCGTTTTGGTCACATATGCACTGAGattttatctatgcaacctcaagatatatttgggagcatttgtacGTGTGAATAATTGTTgccgtgcgaccagtttttaatGCAAAATGTTCACCGGATGAGCAGACTTAGGAGACaatcacgcagaatgcatctttgcacctaaaaatgtGAAATGCAGCACTCaggaatagtttaaaacagtCATCCCGTCAACGTTCAACAGTAAACAAATCCTGCAGTGCAGTGCttcaagctcttctgattggcgCACTGTTCTAGAACtgaacgcgaatggattggttaatatcagctgtcaattaTTCAGTCAATGCTTTCTGTCTTCAGGTGACGGGGGTACAGCCACGAAAATGTAATGCATTGTAGATGAGGGGAAAAAAAGCacagacagattttgttttaaaaactacttaaagttacaaataatgacacagcTGATTAATGATACACTCTTCGAAAAGTGAATAAGACTCTTAAAGCCATTcactttaaagtctgtgtgatgGAGTTTTTAACAGTGTCACTGAATCTACAAATTTTGAGTGCGAGAGGTTCtatataatccttcatttaaagGCCAGgatgatttcaaatgcaataaatctgttaatataaaacttgtagtaacagtGCACATAAATCTTGGTGGGTGTGACTAAATTTGGCTGGTGCGaccacatttttaaagttaggagcaccagtgctactaAGCAAAAAAGTTGATTTTGAGCCCTGATGAGTGATGTTCGGTTAAGTTTATTGAATAAaggtattaaaaa

Function

symbol description
myl6 Predicted to enable calcium ion binding activity. Orthologous to several human genes including MYL6 (myosin light chain 6).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04530 Tight junction
ko04921 Oxytocin signaling pathway
ko04270 Vascular smooth muscle contraction
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-041010-28 Predicted to enable calcium ion binding activity. Orthologous to several human genes including MYL6 (myosin light chain 6).

Ensembl:

ensembl_id ENSDARG00000008494

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064191 False 909 mRNA 0.44 6 39874177 39893507
TCONS_00064192 False 958 mRNA 0.45 7 39874183 39893526
TCONS_00064193 False 814 lncRNA 0.39 3 39874186 39887686
TCONS_00064194 False 891 lncRNA 0.44 5 39874186 39893526
TCONS_00064195 False 615 mRNA 0.44 5 39874321 39893501
TCONS_00064196 True 2265 mRNA 0.41 5 39881881 39893526

Neighbor

gene id symbol gene type direction distance location
XLOC_033032 pfkmb coding downstream 108631 39737408 ~ 39765546 (-)
XLOC_033031 itgb7 coding downstream 146933 39703232 ~ 39727244 (-)
XLOC_033030 espl1 coding downstream 173212 39668850 ~ 39700965 (-)
XLOC_033029 pfdn5 coding downstream 207455 39661588 ~ 39666722 (-)
XLOC_033028 larp4ab coding downstream 220205 39633065 ~ 39653972 (-)
XLOC_033034 tsfm coding upstream 4017 39897543 ~ 39903431 (-)
XLOC_033035 sumf1 coding upstream 20327 39913853 ~ 39920105 (-)
XLOC_033036 pfkfb4b coding upstream 100079 39993605 ~ 40029423 (-)
XLOC_033037 si:dkey-197j19.6 coding upstream 137481 40031007 ~ 40038543 (-)
XLOC_033038 NA coding upstream 145166 40038692 ~ 40044111 (-)
XLOC_033025 CU467856.1 non-coding downstream 348672 39524924 ~ 39525505 (-)
XLOC_033024 NA non-coding downstream 352345 39491846 ~ 39521832 (-)
XLOC_033009 NA non-coding downstream 1109851 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 non-coding downstream 1276393 38597669 ~ 38597784 (-)
XLOC_033006 CR407584.1 non-coding downstream 1516097 38132511 ~ 38358080 (-)
XLOC_033043 NA non-coding upstream 279702 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 489898 40383424 ~ 40409125 (-)
XLOC_033052 NA non-coding upstream 583904 40477430 ~ 40482198 (-)
XLOC_033055 CU855953.1 non-coding upstream 731778 40625304 ~ 40625420 (-)

Expression


Co-expression Network