XLOC_033034 (tsfm)


Basic Information

Item Value
gene id XLOC_033034
gene name tsfm
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39897543 ~ 39903431 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064197
CTTTCTCCCTTACTGTAGAAAACGTGCTTCAATGATATTCCTGATACTGATGTAAGGAAGCCGGTGTCAGTCCTGAGGAAGATACCGTACAGAAGTGGCTATGTATTCTTTATTTCGGTCTGTCAGGAGTGAAGTAGTCAAGGGATGTTTGACGCAGCACGTTCAGTCTCTGTTCACCAGCTGCCCGAGTTTAGCAGCAGACAAAGCGCTTCTACTGCAGCTACGCAAATCTACGGGCTACACATTCGTCAACTGCAAAAAGGCCCTGGAGAAATGCAACAATGACATAACACAGGCAGAAAGCTGGCTTCACGGACAAGCAAAAAAAGAGGGCTGGAGTAAAGCGACCAAACTGGAAGGTCGGAAAGCCAAAGAAGGACTGATTGGTCTCATGATGCATGACAATGCTGCCGTCATGGTTGAGGTTAACTGCGAGACAGACTTTGTGGCGAGGAATGAGAAATTTCAGCAGCTGGTGAAGGATGTTGCATTGTCAGTAATGGCTCATCAATCTACCAGCAAAAAAACTGGGTTTATTAAGAGTGTGCTGTCATCTGAGGACATGTCTAAACTCAATGCTCCTGATGGACCTTCACTGGCAGATCAGTTAGCCTTGACTATAGGGCGCTTGGGTGAGAACATCGCCATGAGGCGAGCCGTTTCACTTTCTGTGCCTTCTGATTGGCACATTGGCTCATACATTCATGGGACGGTTGCTGGGCAGGTTGGCATTGAGATGGGGCGTTATGGATCCCTAGTTGTGTTTCAAGGTGAACCTAAGGAAGGGACATACGCTCTTGGAAGGAAGCTGGCACAACATGTAATGGGTGAAGCACCTGTTTCTCTTGGCAACATGGACGATTTATCATGTGGTGACTCTGAGACGAGACTTTTGCCCCAGACGTTTCTCCCAGATCCCAAATATACAGTGGCACAGTACCTGACTCTTCAAGATGCCCGTGTGCTGGACTTCATACGCTTCCAGTGTGGAGAGAGCAGCAGTCAGGAGTGAAAGGAGCCATTTGAGGATATAAACAATCCTAAATGAGATATTAAAAGTatgaattaattacattttctttaaacagtatatgtatgtatacagtgcctatagaaaatcatcataccctGTGAAAATGTATACCTGTACTCACATTTCACTCTGCTTTTAAAAGATATTCTGTTCAAAATTGTGGAAAGGCACAGGTTAGaaggctacaaaaacatttcaaagggtGGAAAAGTTATTTGTACTGTGATTTGATTTCTGGATGTGTgacaaataaagtcattattttaaatgggtatgatgattttctataggcgctttgtttatatatacatacacatacatacacacacacacacacacacacacacacaatatatatacacaatatatatatatatatatatatatatttatatatatatatatatatactttttttccaAGCCATATCCTTGATATTGCTGCTGTTTTATGTCCCCAAACAAAAAAATTCTAGTTTATTCATGAAGTGAATTAAATAGATAAAATGAGGTCTAATAGACATTGTTATTGTTGTGGTATTGACATGTTACTGTTAAAAAAGGTATCTCAGCCTAGATGGGTCAATCTAAACTCCTGTGCTGTTTCTGTGCCACTAcaaacaataaacattttatctTAATTACTAA
>TCONS_00064198
TCAGGAGTGAAGTAGTCAAGGTGGGCTTGATGTTAGCTTGTCATTCAAATGcgtgtttatttattagtttccGTATGACTATGACATGTCCTAGCATCATTATTTTGTGGCAATAAATTGTTATGAAATTGTGCTATTCACAGGGATGTTTGACGCAGCACGTTCAGTCTCTGTTCACCAGCTGCCCGAGTTTAGCAGCAGACAAAGCGCTTCTACTGCAGCTACGCAAATCTACGGGCTACACATTCGTCAACTGCAAAAAGGCCCTGGAGAAATGCAACAATGACATAACACAGGCAGAAAGCTGGCTTCACGGACAAGCAAAAAAAGAGGGCTGGAGTAAAGCGACCAAACTGGAAGGTCGGAAAGCCAAAGAAGGACTGATTGGTCTCATGATGCATGACAATGCTGCCGTCATGGTTGAGGTTAACTGCGAGACAGACTTTGTGGCGAGGAATGAGAAATTTCAGCAGCTGGTGAAGGATGTTGCATTGTCAGTAATGGCTCATCAATCTACCAGCAAAAAAACTGGGTTTATTAAGAGTGTGCTGTCATCTGAGGACATGTCTAAACTCAATGCTCCTGATGGACCTTCACTGGCAGATCAGTTAGCCTTGACTATAGGGCGCTTGGGTGAGAACATCGCCATGAGGCGAGCCGTTTCACTTTCTGTGCCTTCTGATTGGCACATTGGCTCATACATTCATGGGACGGTTGCTGGGCAGGTTGGCATTGAGATGGGGCGTTATGGATCCCTAGTTGTGTTTCAAGGTGAACCTAAGGAAGGGACATACGCTCTTGGAAGGAAGCTGGCACAACATGTAATGGGTGAAGCACCTGTTTCTCTTGGCAACATGGACGATTTATCATGTGGTGACTCTGAGACGAGACTTTTGCCCCAGACG
>TCONS_00064199
TGGCGCTAAAGTTATCTCGAGATTTCTCTTAGTTTGACCTTTCTCCCTTACTGTAGAAAACGTGCTTCAATGATATTCCTGATACTGATGTAAGGAAGCCGGTGTCAGTCCTGAGGAAGATACCGTACAGAAGTGGCTATGTATTCTTTATTTCGGTCTGTCAGGAGTGAAGTAGTCAAGGGATGTTTGACGCAGCACGTTCAGTCTCTGTTCACCAGCTGCCCGAGTTTAGCAGCAGACAAAGCGCTTCTACTGCAGCTACGCAAATCTACGGGCTACACATTCGTCAACTGCAAAAAGGCCCTGGAGAAATGCAACAATGACATAACACAGGCAGAAAGCTGGCTTCACGGACAAGCAAAAAAAGAGGGCTGGAGTAAAGCGACCAAACTGGAAGGTCGGAAAGCCAAAGAAGGACTGATTGGTCTCATGATGCATGACAATGCTGCCGTCATGGTTGAGGTTAACTGCGAGACAGACTTTGTGGCGAGGAATGAGAAATTTCAGCAGCTGGTGAAGGATGTTGCATTGTCAGTAATGGCTCATCAATCTACCAGCAAAAAAACTGGGTTTATTAAGAGTGTGCTGTCATCTGAGGACATGTCTAAACTCAATGCTCCTGATGGACCTTCACTGGCAGATCAGTTAGCCTTGACTATAGtATTGTCTCTTTTTTTCTGCCTCATCAGGGCGCTTGGGTGAGAACATCGCCATGAGGCGAGCCGTTTCACTTTCTGTGCCTTCTGATTGGCACATTGGCTCATACATTCATGGGACGGTTGCTGGGCAGGTTGGCATTGAGATGGGGCGTTATGGATCCCTAGTTGTGTTTCAAGGTGAACCTAAGGAAGGGACATACGCTCTTGGAAGGAAGCTGGCACAACATGTAATGGGTGAAGCACCTGTTTCTCTTGGCAACATGGACGATTTATCATGTGGTGACTCTGAGACGAGACTTTTGCCCCAGACG

Function

symbol description
tsfm Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 3. Orthologous to human TSFM (Ts translation elongation factor, mitochondrial).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0070125 mitochondrial translational elongation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
ko03012 Translation factors
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-061215-17 Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 3. Orthologous to human TSFM (Ts translation elongation factor, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000060748

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064197 False 1680 mRNA 0.40 6 39897543 39903393
TCONS_00064198 False 905 lncRNA 0.47 5 39898319 39903271
TCONS_00064199 True 970 lncRNA 0.47 6 39898319 39903431

Neighbor

gene id symbol gene type direction distance location
XLOC_033033 myl6 coding downstream 4017 39874177 ~ 39893526 (-)
XLOC_033032 pfkmb coding downstream 131997 39737408 ~ 39765546 (-)
XLOC_033031 itgb7 coding downstream 170299 39703232 ~ 39727244 (-)
XLOC_033030 espl1 coding downstream 196578 39668850 ~ 39700965 (-)
XLOC_033029 pfdn5 coding downstream 230821 39661588 ~ 39666722 (-)
XLOC_033035 sumf1 coding upstream 10422 39913853 ~ 39920105 (-)
XLOC_033036 pfkfb4b coding upstream 90174 39993605 ~ 40029423 (-)
XLOC_033037 si:dkey-197j19.6 coding upstream 127576 40031007 ~ 40038543 (-)
XLOC_033038 NA coding upstream 135261 40038692 ~ 40044111 (-)
XLOC_033039 uroc1 coding upstream 141604 40045035 ~ 40058686 (-)
XLOC_033025 CU467856.1 non-coding downstream 372038 39524924 ~ 39525505 (-)
XLOC_033024 NA non-coding downstream 375711 39491846 ~ 39521832 (-)
XLOC_033009 NA non-coding downstream 1133217 38759546 ~ 38764326 (-)
XLOC_033008 CR628341.2 non-coding downstream 1299759 38597669 ~ 38597784 (-)
XLOC_033006 CR407584.1 non-coding downstream 1539463 38132511 ~ 38358080 (-)
XLOC_033043 NA non-coding upstream 269797 40173228 ~ 40182520 (-)
XLOC_033046 NA non-coding upstream 479993 40383424 ~ 40409125 (-)
XLOC_033052 NA non-coding upstream 573999 40477430 ~ 40482198 (-)
XLOC_033055 CU855953.1 non-coding upstream 721873 40625304 ~ 40625420 (-)

Expression


Co-expression Network