G1404920


Basic Information

Item Value
gene id G1404920
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69071027 ~ 69076995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1604506
ttctctccctccactatactgttacagtgtatcagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctccaccatactgtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctccaccatactgttaCAGTAGACTGACTACATTCTCTCACACAATTTGTTTCGAAATGACGCTCTTTGGCACTCTGTTTACTTTCCAACCTCCTTCACCACTGAggtcagagagaagggggattCCACCTAGCATTCCTTAAAATGTGCTGTTCCCGCCATTGCCTTTAACCTCCTTCACCACTGAGGTCAGACAGAGACCCAACCGTTGACTCAAGGGGGATTCCACCTGTCACTCAGTCTTCATAACTCAATCTGCTATTAactttcaacctctctttcagtCGTTCTTCTCAGGTCATTTCTCTAACACAAATCAGGACCGAATAGGTTATGTAGCAGCTATGGGATGAAGAGCGGTCAGGGAGAACTGAATGAACATGTTTGTTAGGTAGGACAGCAGTAAGTCATCCTGTGCCTTAACAGGGTGTGGCCTCCCCTACGCAGCTGGTTGGTTCTCTTTCTAACGCCACAATAAAACCAGGTaataggacacacctactctatAC
>TU1604505
ttacagtgtatcagtagactacattatctccctccaccatactgttacagtgtatcagtagactacattctctccctccaccatactgtatcagtagactacattctctccctccaccatactgtatcagtagactacattctctccctctaccatactgttacagtgtatcagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattctctccctccaccatactgtatcagtagactacattatctccctccaccatactgttacagtagactacattatctccctccaccatactgtatcagtagactacattatctccctccaccatactgttacagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattatctccctccaccatactgtatcagtagactacattctctccctccaccatactgttacagtgtatcggtagactacattctctccctccactatactgttacagtatcagtagactacattctctccctccactatactgtatcagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattctctccctctaccatactgtatcagtagactacattctctccctccaccatactgttacagtgtatcggtagactacattctctccctccactatactgttacagtatcagtagactacattctctccctccactatactgttacagtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctccaccatagtgtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctctaccatactgttacagtgtatcagtagactacattctctccctccactatactgttacagtatcagtagactacattctctccctccactatactgttacagtgtatcagtagactacattctctccctccaccatactgttacagtgtatcagtagactacattctctccctccaccatactgttacagtatcagtagactacattctctccctccaccatactgtatcagtagactacattctctccctccactatactgttacagtat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106530074

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1604506 False 773 lncRNA 0.45 2 69071027 69074520
TU1604505 True 1495 lncRNA 0.42 3 69074063 69076995

Neighbor

gene id symbol gene type direction distance location
LOC110492630 LOC106566458 coding downstream 153601 68915576 ~ 68917426 (-)
LOC110491168 LOC106566483 coding downstream 174907 68894981 ~ 68896120 (-)
LOC118939478 LOC106566484 coding downstream 277699 68791189 ~ 68795025 (-)
LOC110492626 LOC106566459 coding downstream 298774 68703920 ~ 68772253 (-)
LOC110492627 LOC106566460 coding downstream 367424 68671413 ~ 68703603 (-)
LOC110492636 LOC106566437 coding upstream 36021 69113016 ~ 69123466 (-)
LOC110492644 LOC106566447 coding upstream 277507 69354502 ~ 69379181 (-)
LOC110491170 LOC106566448 coding upstream 393421 69470416 ~ 69506016 (-)
LOC118939576 NA coding upstream 494858 69571853 ~ 69575843 (-)
LOC110491172 LOC106566442 coding upstream 500679 69577674 ~ 69666017 (-)
G1404898 NA non-coding downstream 35020 69035130 ~ 69036007 (-)
G1404897 LOC106566435 non-coding downstream 37871 69031193 ~ 69033156 (-)
G1404892 NA non-coding downstream 45325 69024959 ~ 69025702 (-)
G1404866 NA non-coding downstream 64849 69005577 ~ 69006178 (-)
G1404691 NA non-coding downstream 111677 68957602 ~ 68959350 (-)
G1404930 NA non-coding upstream 15646 69092641 ~ 69093770 (-)
G1404937 NA non-coding upstream 31060 69108055 ~ 69108429 (-)
G1404944 NA non-coding upstream 50465 69127460 ~ 69127726 (-)
G1404952 NA non-coding upstream 97702 69174697 ~ 69244266 (-)
G1404962 NA non-coding upstream 108748 69185743 ~ 69186013 (-)
G1403498 NA other downstream 1626848 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 2576360 66484901 ~ 66494667 (-)
G1402686 srpk3 other downstream 2644705 66425551 ~ 66426322 (-)
LOC110492562 LOC106568106 other downstream 3316417 65715711 ~ 65754610 (-)
G1404974 LOC106566438 other upstream 126291 69203286 ~ 69207158 (-)
G1405016 nsfl1c other upstream 200832 69277827 ~ 69280359 (-)
G1405172 NA other upstream 440760 69517755 ~ 69518113 (-)
G1405917 NA other upstream 1001662 70078657 ~ 70095541 (-)
LOC110492660 LOC106566428 other upstream 1142882 70216538 ~ 70221552 (-)

Expression


Co-expression Network