G1404991 (LOC105013763)


Basic Information

Item Value
gene id G1404991
gene name LOC105013763
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69305727 ~ 69312263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1604592
CCCCAACCTCATTAATGCCAGATATCCCGGTAATTGAAGAAAAAAATGGACTTTCCACAAAGCAGGTAGAGAGCACTTTATTGCAACTGCAAAACATTTATTGGTTGTGCCTGCGTATGTAACTCAGCACACAAATACACAGTACATAGGACTGCATTTGTGCCATGCGCCTAGACAGCTGTAACATCAAGAGCAATGATGGCCAGCATCTGAACATGTTCTCTATGCATTAGATTTAACTCTATTTCAACATACTTTTAAATGTGATACAAAACATGGATGTCTCCGTCACCTGACTACCACAACACAGCATTTTTATTTAGGCAGTGTGGTGTCAGTCTAATGACGCtgacaaaaaaatatttaccaTTCAATTACAGGTAAAAGTAGAAGTCATTCTTAGTTACCaagtcaaattgtattggtcgcatacacacaTTTTAGAAAGATGGCATCTGAAAAATATATAATGTCAAGTTGTGAGACAAAATAAGGTGGGGGGGGGTCACAATTGAATCGATTCCTCAACCCCCTTTTCAAAATCATCACTACTCCAATTAATGTGCGTATACGATATGGTTCCCATCACTGTTAATAACACATGTATGGCTTTCAACAGGGTTAAAGATTTGACTTGGAAAGAAAcataagcaacaacaacaacaaaaaatatgaaaatgcAAAACGTTGACACCTATAGATCAGGATATCATTATGTAGGACATGCAGAACCAGCTAGTTGGTTGCTCGTATGTCTCGTAATGAGAGACACGCAATATGATACAACAATTCCCTTCTGTACTGGTTTCTCTGTGCAGAATGCTCACTAGCGCCTAATAAAGTTAATCAAAATGAAAGGAAACATCACTATTTAGTCTGGGTAAATAACATATGTTCCTGTTGTATACCATTAAGACATCCCATGACTCAATATTTTAATACACTTATGCCTCTCAACATTACACTAGGCCCTACaactctaaaaaaaaaaatctattcatATTTGTTCTACTTTCAGCTGGGTGAGGTATGGATGCAAACATGTACTTTTCATATTCTCTTAGTTTTGTTCCTCGGGTAGGCTTCACGTCAAGCACCAGCCCTCTATGTTGCTGATAGGTTCTCTTGAAAAGAGATGAATGTCGCTGCTAATATTTCATTggtattttgcattactcatataACCATGCACAACCAATCATTTCACAAAACAAAGTAAAGCACAATTAAAAAATTAAAGATTTAAAAACATCAAGGTTTGTAAGGTTTTAAGGTTATGGCCCATAGgtttttaaagaaaaacaaaaTAACCAAGGCATTGATAACGAAGATTTTGTATATATGGATAAAATAATGACCAAAGTGGTGGAATTATAGACTCAGGTCTCTTATAGAATCAAGTGCAGACTTTCTTAGCCTTTCTACATGTTTCCTAGGTAGAAAGCAGCaaaaaaattaaaaaaaacttcATTCAAGGCTCAGTAGCTCAACATCAAAGATGAGGGTGGCGTTGGGTGGAATGATCCCCGGGTGGCCCTTTGCTCCGTAGGCAAAGTCAGGCGAGCAGGTCAGCTTGGCTCTCTGACCGACACTCATCTGCACGACTCCCTCTTCCCAGCCACGGATCACTTCCTGTTTTCCTATTTTAAACCTGAAGGGCTTGTCCCTGTCACGGGAGGAGTCAAACTTGCGTCCATCCGTCAGAGAGCCAACATAATGCACCACGCACGTCTGTCCTTTTTTAGGGAAGGTCCTTCCTGTGGGAGAAAAAGCCATAGAAAAACAGGATAACTGGCATGAAAAGACGACGAGACGCTAAAACAGGATAACGGGCATGAAAAGACGACGCGACGCTAAAACAGGATAACGGGCATGAGAAGACTAAGAGAAGCTGCCTTTTTTTGTGTGGAAATTAAAATGAATTAACGGAAATCCATCAGAAATCTTGAGCTAAAGATATGCATAAAAATATTTTACCATCGCCCGGGGTTATTGTCTCAATTTCTACTCCCATTTCCTTCGTTAATATCCCTCCACCCTACCAAGAGACTATCTTCCTTCAATCTGCTATTTCAGC
>TU1604593
CCCCAACCTCATTAATGCCAGATATCCCGGTAATTGAAGAAAAAAATGGACTTTCCACAAAGCAGGTAGAGAGCACTTTATTGCAACTGCAAAACATTTATTGGTTGTGCCTGCGTATGTAACTCAGCACACAAATACACAGTACATAGGACTGCATTTGTGCCATGCGCCTAGACAGCTGTAACATCAAGAGCAATGATGGCCAGCATCTGAACATGTTCTCTATGCATTAGATTTAACTCTATTTCAACATACTTTTAAATGTGATACAAAACATGGATGTCTCCGTCACCTGACTACCACAACACAGCATTTTTATTTAGGCAGTGTGGTGTCAGTCTAATGACGCtgacaaaaaaatatttaccaTTCAATTACAGGTAAAAGTAGAAGTCATTCTTAGTTACCaagtcaaattgtattggtcgcatacacacaTTTTAGAAAGATGGCATCTGAAAAATATATAATGTCAAGTTGTGAGACAAAATAAGGTGGGGGGGGGTCACAATTGAATCGATTCCTCAACCCCCTTTTCAAAATCATCACTACTCCAATTAATGTGCGTATACGATATGGTTCCCATCACTGTTAATAACACATGTATGGCTTTCAACAGGGTTAAAGATTTGACTTGGAAAGAAAcataagcaacaacaacaacaaaaaatatgaaaatgcAAAACGTTGACACCTATAGATCAGGATATCATTATGTAGGACATGCAGAACCAGCTAGTTGGTTGCTCGTATGTCTCGTAATGAGAGACACGCAATATGATACAACAATTCCCTTCTGTACTGGTTTCTCTGTGCAGAATGCTCACTAGCGCCTAATAAAGTTAATCAAAATGAAAGGAAACATCACTATTTAGTCTGGGTAAATAACATATGTTCCTGTTGTATACCATTAAGACATCCCATGACTCAATATTTTAATACACTTATGCCTCTCAACATTACACTAGGCCCTACaactctaaaaaaaaaaatctattcatATTTGTTCTACTTTCAGCTGGGTGAGGTATGGATGCAAACATGTACTTTTCATATTCTCTTAGTTTTGTTCCTCGGGTAGGCTTCACGTCAAGCACCAGCCCTCTATGTTGCTGATAGGTTCTCTTGAAAAGAGATGAATGTCGCTGCTAATATTTCATTggtattttgcattactcatataACCATGCACAACCAATCATTTCACAAAACAAAGTAAAGCACAATTAAAAAATTAAAGATTTAAAAACATCAAGGTTTGTAAGGTTTTAAGGTTATGGCCCATAGgtttttaaagaaaaacaaaaTAACCAAGGCATTGATAACGAAGATTTTGTATATATGGATAAAATAATGACCAAAGTGGTGGAATTATAGACTCAGGTCTCTTATAGAATCAAGTGCAGACTTTCTTAGCCTTTCTACATGTTTCCTAGGTAGAAAGCAGCaaaaaaattaaaaaaaacttcATTCAAGGCTCAGTAGCTCAACATCAAAGATGAGGGTGGCGTTGGGTGGAATGATCCCCGGGTGGCCCTTTGCTCCGTAGGCAAAGTCAGGCGAGCAGGTCAGCTTGGCTCTCTGACCGACACTCATCTGCACGACTCCCTCTTCCCAGCCACGGATCACTTCCTGTTTTCCTATTTTAAACCTGAAGGGCTTGTCCCTGTCACGGGAGGAGTCAAACTTGCGTCCATCCGTCAGAGAGCCAACATAATGCACCACGCACGTCTGTCCTTTTTTAGGGAAGGTCCTTCCATCGCCCGGGGTTATTGTCTCAATTTCTACTCCCATTTCCTTCGTTAATATCCCTCCACCCTACCAAGAGACTATCTTCCTTCAATCTGCTATTTCAGC
>TU1604594
TCGCCAAGGTTGTGGCCTGAGATTTAAGGGAATTTGCATTGGTGCTTGCATTCAGACAGACACTTGAAATGAATCTCCCAAACTCACCAACATAATGCACCACGCACGTCTGTCCTTTTTTAGGGAAGGTCCTTCCTGTGGGAGAAAAAGCCATAGAAAAACAGGATAACTGGCATGAAAAGACGACGAGACGCTAAAACAGGATAACGGGCATGAGAAGACTAAGAGAAGCTGCCTTTTTTTGTGTGGAAATTAAAATGAATTAACGGAAATCCATCAGAAATCTTGAGCTAAAGATATGCATAAAAATATTTTACCATCGCCCGGGGTTATTGTCTCAATTTCTACTCCCATTTCCTTCGTTAATATCCCTCCACCCTACCAAGAGACTATCTTCCTTCAATCTGCTATTTCAGC
>TU1604591
CCCCAACCTCATTAATGCCAGATATCCCGGTAATTGAAGAAAAAAATGGACTTTCCACAAAGCAGGTAGAGAGCACTTTATTGCAACTGCAAAACATTTATTGGTTGTGCCTGCGTATGTAACTCAGCACACAAATACACAGTACATAGGACTGCATTTGTGCCATGCGCCTAGACAGCTGTAACATCAAGAGCAATGATGGCCAGCATCTGAACATGTTCTCTATGCATTAGATTTAACTCTATTTCAACATACTTTTAAATGTGATACAAAACATGGATGTCTCCGTCACCTGACTACCACAACACAGCATTTTTATTTAGGCAGTGTGGTGTCAGTCTAATGACGCtgacaaaaaaatatttaccaTTCAATTACAGGTAAAAGTAGAAGTCATTCTTAGTTACCaagtcaaattgtattggtcgcatacacacaTTTTAGAAAGATGGCATCTGAAAAATATATAATGTCAAGTTGTGAGACAAAATAAGGTGGGGGGGGGTCACAATTGAATCGATTCCTCAACCCCCTTTTCAAAATCATCACTACTCCAATTAATGTGCGTATACGATATGGTTCCCATCACTGTTAATAACACATGTATGGCTTTCAACAGGGTTAAAGATTTGACTTGGAAAGAAAcataagcaacaacaacaacaaaaaatatgaaaatgcAAAACGTTGACACCTATAGATCAGGATATCATTATGTAGGACATGCAGAACCAGCTAGTTGGTTGCTCGTATGTCTCGTAATGAGAGACACGCAATATGATACAACAATTCCCTTCTGTACTGGTTTCTCTGTGCAGAATGCTCACTAGCGCCTAATAAAGTTAATCAAAATGAAAGGAAACATCACTATTTAGTCTGGGTAAATAACATATGTTCCTGTTGTATACCATTAAGACATCCCATGACTCAATATTTTAATACACTTATGCCTCTCAACATTACACTAGGCCCTACaactctaaaaaaaaaaatctattcatATTTGTTCTACTTTCAGCTGGGTGAGGTATGGATGCAAACATGTACTTTTCATATTCTCTTAGTTTTGTTCCTCGGGTAGGCTTCACGTCAAGCACCAGCCCTCTATGTTGCTGATAGGTTCTCTTGAAAAGAGATGAATGTCGCTGCTAATATTTCATTggtattttgcattactcatataACCATGCACAACCAATCATTTCACAAAACAAAGTAAAGCACAATTAAAAAATTAAAGATTTAAAAACATCAAGGTTTGTAAGGTTTTAAGGTTATGGCCCATAGgtttttaaagaaaaacaaaaTAACCAAGGCATTGATAACGAAGATTTTGTATATATGGATAAAATAATGACCAAAGTGGTGGAATTATAGACTCAGGTCTCTTATAGAATCAAGTGCAGACTTTCTTAGCCTTTCTACATGTTTCCTAGGTAGAAAGCAGCaaaaaaattaaaaaaaacttcATTCAAGGCTCAGTAGCTCAACATCAAAGATGAGGGTGGCGTTGGGTGGAATGATCCCCGGGTGGCCCTTTGCTCCGTAGGCAAAGTCAGGCGAGCAGGTCAGCTTGGCTCTCTGACCGACACTCATCTGCACGACTCCCTCTTCCCAGCCACGGATCACTTCCTGTTTTCCTATTTTAAACCTGAAGGGCTTGTCCCTGTCACGGGAGGAGTCAAACTTGCGTCCATCCGTCAGAGAGCCTGAGGAGGAGGAAATGAGAGGCAGAGAGGATTTATTTTGACAATCTGTAACAGAgatggtggcatgtcttgttaCGTTTCAACGCAATCATTTCAGAACTGGACTGGGGGTGCAATTCCTGCACTAAAACCCAAACTAACTTGAGTTCCAGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1604592 False 2077 lncRNA 0.39 4 69305727 69312263
TU1604593 False 1857 lncRNA 0.39 5 69305727 69312263
TU1604594 False 417 lncRNA 0.41 2 69305727 69306181
TU1604591 True 1862 lncRNA 0.39 3 69309372 69312263

Neighbor

gene id symbol gene type direction distance location
LOC110492636 LOC106566437 coding downstream 182261 69113016 ~ 69123466 (-)
LOC110492630 LOC106566458 coding downstream 388301 68915576 ~ 68917426 (-)
LOC110491168 LOC106566483 coding downstream 409607 68894981 ~ 68896120 (-)
LOC118939478 LOC106566484 coding downstream 512399 68791189 ~ 68795025 (-)
LOC110492626 LOC106566459 coding downstream 533474 68703920 ~ 68772253 (-)
LOC110492644 LOC106566447 coding upstream 42239 69354502 ~ 69379181 (-)
LOC110491170 LOC106566448 coding upstream 158153 69470416 ~ 69506016 (-)
LOC118939576 NA coding upstream 259590 69571853 ~ 69575843 (-)
LOC110491172 LOC106566442 coding upstream 265411 69577674 ~ 69666017 (-)
LOC118936543 LOC106566425 coding upstream 814990 70127253 ~ 70133280 (-)
G1405017 NA non-coding downstream 20120 69284975 ~ 69285607 (-)
G1405010 NA non-coding downstream 33252 69272267 ~ 69272475 (-)
G1405006 NA non-coding downstream 41623 69263114 ~ 69264104 (-)
G1404952 NA non-coding downstream 61461 69174697 ~ 69244266 (-)
G1404993 NA non-coding upstream 39454 69351717 ~ 69353915 (-)
G1405067 NA non-coding upstream 103713 69415976 ~ 69416177 (-)
G1405076 NA non-coding upstream 110975 69423238 ~ 69423487 (-)
G1405104 NA non-coding upstream 136999 69449262 ~ 69449564 (-)
G1405107 NA non-coding upstream 142923 69455186 ~ 69455456 (-)
G1405016 nsfl1c other downstream 25368 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 98569 69203286 ~ 69207158 (-)
G1403498 NA other downstream 1861548 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 2811060 66484901 ~ 66494667 (-)
G1405172 NA other upstream 205492 69517755 ~ 69518113 (-)
G1405917 NA other upstream 766394 70078657 ~ 70095541 (-)
LOC110492660 LOC106566428 other upstream 907614 70216538 ~ 70221552 (-)
G1406228 NA other upstream 1423384 70735647 ~ 70742179 (-)
G1406514 NA other upstream 1948059 71260322 ~ 71260817 (-)

Expression


Co-expression Network