G1405138


Basic Information

Item Value
gene id G1405138
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69468357 ~ 69468876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1604774
aggagaggagaggagaggagcaggctaTGGTGTGTCACATCTGCCGGCTCTGATGGAGACAAGAAAAGCACTGAGAAAGGCAGGCCAAAGGAAGGTCTGTTATGACAGCGTCACACGTGCTTTCATAATGTGTAAATGTTTCCATTTCCTTCGCTTTGATGAAAAATATACATTGGCAATATTGCAGCTGCATTTGCCTACTAtaattgtatttaattttttCTCTTGACTACAAAGGGTTTTATGAACAATACAATGCAATGTACTCATAAGGAACACCAATACACTTTTGTATATAGCCATGGATGTAGATTGTAGAGGCCCACAAATATAGTCAAAGACATGACATATATGTAGTGCTTTGATGACAGTGTTGTGCAAGGTTATGCTCAGGACATCTAGCTCAAACTGCTCCTGACAGATGCTGATGTTGTACGTATTCATGACGTTTATCAGAGCAGTTGCTCATGATGTACACCCCCTGCTGCATACACCCCCTGCTGCATACACCCCCTGCTGC
>TU1604771
aggagaggagaggagaggagcaggctaTGGTGTGTCACATCTGCCGGCTCTGATGGAGACAAGAAAAGCACTGAGAAAGGCAGGCCAAAGGAAGGTCTGTTATGACAGCGTCACACGTGCTTTCATAATGTGTAAATGTTTCCATTTCCTTCGCTTTGATGAAAAATATACATTGGCAATATTGCAGCTGCATTTGCCTACTAtaattgtatttaattttttCTCTTGACTACAAAGGGTTTTATGAACAATACAATGCAATGTACTCATAAGGAACACCAATACACTTTTGTATATAGCCATGGATGTAGATTGTAGAGGCCCACAAATATAGTCAAAGACATGACATATATGTAGTGCTTTGATGACAGTGTTGTGCAAGGTTATGCTCAGGACATCTAGCTCAAACTGCTCCTGACAGATGCTGATGTTGTACGTATTCATGACGTTTATCAGAGC
>TU1604773
aggagaggagaggagaggagcaggctaTGGTGTGTCACATCTGCCGGCTCTGATGGAGACAAGAAAAGCACTGAGAAAGGCAGGCCAAAGGAAGGTCTGTTATGACAGCGTCACACGTGCTTTCATAATGTGTAAATGTTTCCATTTCCTTCGCTTTGATGAAAAATATACATTGGCAATATTGCAGCTGCATTTGCCTACTAtaattgtatttaattttttCTCTTGACTACAAAGGGTTTTATGAACAATACAATGCAATGTACTCATAAGGAACACCAATACACTTTTGTATATAGCCATGGATGTAGATTGTAGAGGCCCACAAATATAGTCAAAGACATGACATATATGTAGTGCTTTGATGACAGTGTTGTGCAAGGTTATGCTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1604774 False 520 lncRNA 0.43 1 69468357 69468876
TU1604771 False 459 lncRNA 0.40 1 69468418 69468876
TU1604773 True 394 lncRNA 0.40 1 69468483 69468876

Neighbor

gene id symbol gene type direction distance location
LOC110492644 LOC106566447 coding downstream 89176 69354502 ~ 69379181 (-)
LOC110492636 LOC106566437 coding downstream 344891 69113016 ~ 69123466 (-)
LOC110492630 LOC106566458 coding downstream 550931 68915576 ~ 68917426 (-)
LOC110491168 LOC106566483 coding downstream 572237 68894981 ~ 68896120 (-)
LOC118939478 LOC106566484 coding downstream 675029 68791189 ~ 68795025 (-)
LOC110491170 LOC106566448 coding upstream 1540 69470416 ~ 69506016 (-)
LOC118939576 NA coding upstream 102977 69571853 ~ 69575843 (-)
LOC110491172 LOC106566442 coding upstream 108798 69577674 ~ 69666017 (-)
LOC118936543 LOC106566425 coding upstream 658377 70127253 ~ 70133280 (-)
LOC118939578 NA coding upstream 716499 70185375 ~ 70187858 (-)
G1405107 NA non-coding downstream 12901 69455186 ~ 69455456 (-)
G1405104 NA non-coding downstream 18793 69449262 ~ 69449564 (-)
G1405076 NA non-coding downstream 44870 69423238 ~ 69423487 (-)
G1405067 NA non-coding downstream 52180 69415976 ~ 69416177 (-)
G1404993 NA non-coding downstream 114442 69351717 ~ 69353915 (-)
G1405184 NA non-coding upstream 57833 69526709 ~ 69526933 (-)
G1405252 NA non-coding upstream 77529 69546405 ~ 69588880 (-)
G1405281 NA non-coding upstream 143560 69612436 ~ 69619436 (-)
G1405292 NA non-coding upstream 175143 69644019 ~ 69644846 (-)
G1405016 nsfl1c other downstream 187998 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 261199 69203286 ~ 69207158 (-)
G1403498 NA other downstream 2024178 67443421 ~ 67444179 (-)
G1402707 LOC106566505 other downstream 2973690 66484901 ~ 66494667 (-)
G1405172 NA other upstream 48879 69517755 ~ 69518113 (-)
G1405917 NA other upstream 609781 70078657 ~ 70095541 (-)
LOC110492660 LOC106566428 other upstream 751001 70216538 ~ 70221552 (-)
G1406228 NA other upstream 1266771 70735647 ~ 70742179 (-)
G1406514 NA other upstream 1791446 71260322 ~ 71260817 (-)

Expression


Co-expression Network