G1405216


Basic Information

Item Value
gene id G1405216
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69580729 ~ 69583626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1604866
TGTCTGTACAGTATGATGGGTTTCCATACAGTACGTGTGAAATATCTATTGTTCCAATAAGTATGGTAATGTTTGAAATACTGTGTTTGATTCTCAGAACGTGTGTGTATTTGATCATGTCGGTGTATTTAATGTTCAGtaatgtgtccctgtgtgtatttGATCATCCAGGTGTAATGTTCATtaatgtgtccctgtgtgtatttGATCATCCAGGTGTAATGTTCATtaatgtgtccctgtgtgtatttGATCATCCAGGTGTAATGTTCAGTAACGTGTCCCTGTGGGTATTTGCCAAGAGTCATAAATGTAATGTCTGCAAACAGACCCGACAAGAGAGCCATGACTCAACAGTATCCATGGAAACTGATCCTTTGTCCCACAATCCTATCTCCCACATAGTTTGTCTTTTACTTCAGTCTCTTCTCGCGTGACCTTGCTTAGTTCTTTAGTACCGCTTGATGAAGAACGCGGTGGCTAttaaaatgcatcaaTGTGTTTGGTCCAATGGTCTCTGTGTCAATGTTTCTGTGATTtgagtgagtgagggaaaaaTCCTTGTTTCAGTCACATGAATTCAATCCCCTGGAATTGAAAAAGCTTCAATATTTGAGGGTCTGAGTGAAGTGTCAGAAGGTTAATGGAGATAGTTATAGTATATTCGTTGTTTCTGCTGGGAGAGTAAGaggatgagagtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtctgtctgtgtgtttgaggaagagagagatacagggagtgAGAGAAGACATGTCATTTGCTTggttatgtgtgtgtacatgtgataCATGCAAGTGATTTTGAAATCAAATGATAGCGTTGTTCacctgttgtttaaaaaaaaaaaacatcttaagaaacatttcaataaaAGTCATATACATTTCTATTCCATTTACAAAAGTACCAAAACAAAACCCATAAGACTAGATTTACAGAAGGGCTAGTGAGTGAAGAGACACAACAGTAAGACTAGGAAGGTTTAAGGTTACACACACTATCACGTGGCGGTAAAGTCCATGGTGGGATCAGGTGGGAGAACGAAGGAGAGAAGATGGAGGCATTTGGGTCCATCAAAAAtgaatacatttaaaacataaaAAACATGAGGAATGTAAAATTGCCAACACAAGTTCTAAAGAGTCATGTGATCGTAACGTAAACAATAAAGACAAAAAAATATACTGTAAAGTGTTCTAGAACAGGGCAATTTGATGGGGGATTGTTTGGTCAGGGAAAACTAATTCTGAATCATCAGCTATATCCTCTACCTCGGTgctgtccaaccctcttcctggagatctactgtccagtaggttcagtccaaccctcttcctggagatctactgtccagtaggttttcagtccaaccaaGTGGTAGAGGTTAATGGTTCACTGTCTCAGGCAAAACCAATGAGTTGTGGCATTCCACTGGGGAGCGTGCTTGGGCCTCTGCtgtttttattgtatattaaCGATATGAAAGATGCTTGTTCTTGCCGTCTTTTTCTTCATGTGGATGACTCTACACTTCTGGTGTCTCACAAAAGTAAAACTATGTTGGAGAGCATACTTAGCACAGAGCTTACTAGCATTAGCAAATGGCTTGGAGATAATAAGCTATCTCTGCACTTAGGGAAAACTGAAGTAATTATTTTTGGATCCAGACCTAAATTGAGTAGGTTCTCTAAAATCAGTGTGGAATTAAGGGGTCCGGTGTTGACTACTAAAATCTCTGTTAGCTACTTGGGATGTATCCTTGATGGAAGCTTGGGAGGTGTGAGCATGGCCAATAAGGTGCTATAGGGAAGGTTAATGCCAGGACTATGTCTTTGGCTAGAATGTCCAAGCTGCTTGATAAGGACTCCATGAAAGTGCTAGCTACTGCCctcattcaatgccattttgattatgctagtacttcctggtttgggGGCTTATCTAAACTTATGAAGGGGAAGCTCCAGATAGCCCAGAATAAGCTGATCAGGGTAGTATTGAAGGTGAGTCCACGTATTCACATAGGCAGCAGCTGCTTTCAGGAACTAAACTAATctttcctggagatctactgtcctgtaggttttcagtcctaccctcttcctggagatctactgtcctgtaggttttcagtcttACACTCTTcttggagatctactgtcctgtaggttttcagtctaaccctcttcctggagatctactgtcctgtaggttttcagtcctaCCCTAATGtagcatatctgattcagctagttaagatcttgttgagcagctaatatgtagaatcaggtgtgtt
>TU1604867
atttattttacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcggggatttgaacttgcaaccttccggttactagtccaacgctctaaccactaggctaccctgccgccccaaaaaaaaaaatgcatcaaTGTGTTTGGTCCAATGGTCTCTGTGTCAATGTTTCTGTGATTtgagtgagtgagggaaaaaTCCTTGTTTCAGTCACATGAATTCAATCCCCTGGAATTGAAAAAGCTTCAATATTTGAGGGTCTGAGTGAAGTGTCAGAAGGTTAATGGAGATAGTTATAGTATATTCGTTGTTTCTGCTGGGAGAGTAAGaggatgagagtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtctgtctgtgtgtttgaggaagagagagatacagggagtgAGAGAAGACATGTCATTTGCTTggttatgtgtgtgtacatgtgataCATGCAAGTGATTTTGAAATCAAATGATAGCGTTGTTCacctgttgtttaaaaaaaaaaaacatcttaagaaacatttcaataaaAGTCATATACATTTCTATTCCATTTACAAAAGTACCAAAACAAAACCCATAAGACTAGATTTACAGAAGGGCTAGTGAGTGAAGAGACACAACAGTAAGACTAGGAAGGTTTAAGGTTACACACACTATCACGTGGCGGTAAAGTCCATGGTGGGATCAGGTGGGAGAACGAAGGAGAGAAGATGGAGGCATTTGGGTCCATCAAAAAtgaatacatttaaaacataaaAAACATGAGGAATGTAAAATTGCCAACACAAGTTCTAAAGAGTCATGTGATCGTAACGTAAACAATAAAGACAAAAAAATATACTGTAAAGTGTTCTAGAACAGGGCAATTTGATGGGGGATTGTTTGGTCAGGGAAAACTAATTCTGAATCATCAGCTATATCCTCTACCTCGGTgctgtccaaccctcttcctggagatctactgtccagtaggttcagtccaaccctcttcctggagatctactgtccagtaggttttcagtccaaccaaGTGGTAGAGGTTAATGGTTCACTGTCTCAGGCAAAACCAATGAGTTGTGGCATTCCACTGGGGAGCGTGCTTGGGCCTCTGCtgtttttattgtatattaaCGATATGAAAGATGCTTGTTCTTGCCGTCTTTTTCTTCATGTGGATGACTCTACACTTCTGGTGTCTCACAAAAGTAAAACTATGTTGGAGAGCATACTTAGCACAGAGCTTACTAGCATTAGCAAATGGCTTGGAGATAATAAGCTATCTCTGCACTTAGGGAAAACTGAAGTAATTATTTTTGGATCCAGACCTAAATTGAGTAGGTTCTCTAAAATCAGTGTGGAATTAAGGGGTCCGGTGTTGACTACTAAAATCTCTGTTAGCTACTTGGGATGTATCCTTGATGGAAGCTTGGGAGGTGTGAGCATGGCCAATAAGGTGCTATAGGGAAGGTTAATGCCAGGACTATGTCTTTGGCTAGAATGTCCAAGCTGCTTGATAAGGACTCCATGAAAGTGCTAGCTACTGCCctcattcaatgccattttgattatgctagtacttcctggtttgggGGCTTATCTAAACTTATGAAGGGGAAGCTCCAGATAGCCCAGAATAAGCTGATCAGGGTAGTATTGAAGGTGAGTCCACGTATTCACATAGGCAGCAGCTGCTTTCAGGAACTAAACTAATctttcctggagatctactgtcctgtaggttttcagtcctaccctcttcctggagatctactgtcctgtaggttttcagtcttACACTCTTcttggagatctactgtcctgtaggttttcagtctaaccctcttcctggagatctactgtcctgtaggttttcagtcctaCCCTAATGtagcatatctgattcagctagttaagatcttgttgagcagctaatatgtagaatcaggtgtgtt
>TU1604868
ccctcttcctggagatctactgtccagtaggttcagtccaaccctcttcctggagatctactgtccagGAGGTTCAGTCCAACCcttttcctggagatctactgtccagtaggttttcagtccaaccaaGTGGTAGAGGTTAATGGTTCACTGTCTCAGGCAAAACCAATGAGTTGTGGCATTCCACTGGGGAGCGTGCTTGGGCCTCTGCtgtttttattgtatattaaCGATATGAAAGATGCTTGTTCTTGCCGTCTTTTTCTTCATGTGGATGACTCTACACTTCTGGTGTCTCACAAAAGTAAAACTATGTTGGAGAGCATACTTAGCACAGAGCTTACTAGCATTAGCAAATGGCTTGGAGATAATAAGCTATCTCTGCACTTAGGGAAAACTGAAGTAATTATTTTTGGATCCAGACCTAAATTGAGTAGGTTCTCTAAAATCAGTGTGGAATTAAGGGGTCCGGTGTTGACTACTAAAATCTCTGTTAGCTACTTGGGATGTATCCTTGATGGAAGCTTGGGAGGTGTGAGCATGGCCAATAAGGTGCTATAGGGAAGGTTAATGCCAGGACTATGTCTTTGGCTAGAATGTCCAAGCTGCTTGATAAGGACTCCATGAAAGTGCTAGCTACTGCCctcattcaatgccattttgattatgctagtacttcctggtttgggGGCTTATCTAAACTTATGAAGGGGAAGCTCCAGATAGCCCAGAATAAGCTGATCAGGGTAGTATTGAAGGTGAGTCCACGTATTCACATAGGCAGCAGCTGCTTTCAGGAACTAAACTAATctttcctggagatctactgtcctgtaggttttcagtcctaccctcttcctggagatctactgtcctgtaggttttcagtcttACACTCTTcttggagatctactgtcctgtaggttttcagtctaaccctcttcctggagatctactgtcctgtaggttttcagtcctaCCCTAATGtagcatatctgattcagctagttaagatcttgttgagcagctaatatgtagaatcaggtgtgtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1604866 False 2334 TUCP 0.41 5 69580729 69583626
TU1604867 False 2053 TUCP 0.41 3 69581367 69583626
TU1604868 True 1051 TUCP 0.44 2 69582533 69583626

Neighbor

gene id symbol gene type direction distance location
LOC118939480 NA coding upstream 151888 69428060 ~ 69428841 (+)
LOC110492642 LOC106566441 coding upstream 233174 69313323 ~ 69347555 (+)
fkbp1ab LOC100705189 coding upstream 268525 69305670 ~ 69312263 (+)
LOC110492640 mfsd2 coding upstream 275337 69289013 ~ 69305392 (+)
LOC110492639 LOC106566439 coding upstream 299114 69277801 ~ 69281615 (+)
LOC110492656 LOC106566444 coding downstream 109396 69693022 ~ 69696403 (+)
LOC110492659 LOC106566420 coding downstream 402551 69986177 ~ 69996398 (+)
LOC118939577 LOC106566421 coding downstream 459622 70043248 ~ 70069326 (+)
LOC110492657 hck coding downstream 495067 70078693 ~ 70095267 (+)
LOC110492652 LOC106566422 coding downstream 512823 70096449 ~ 70111837 (+)
G1405214 NA non-coding upstream 7626 69572402 ~ 69573103 (+)
G1405203 NA non-coding upstream 38341 69542174 ~ 69542388 (+)
G1405198 NA non-coding upstream 41418 69538809 ~ 69539311 (+)
G1405188 NA non-coding upstream 49393 69531125 ~ 69531336 (+)
G1405171 NA non-coding upstream 62767 69517597 ~ 69517962 (+)
G1405233 LOC106572122 non-coding downstream 42302 69625928 ~ 69641957 (+)
G1405240 NA non-coding downstream 54884 69638510 ~ 69639633 (+)
G1405245 NA non-coding downstream 66121 69649747 ~ 69652316 (+)
G1405325 NA non-coding downstream 115231 69698857 ~ 69699511 (+)
G1405331 NA non-coding downstream 120556 69704182 ~ 69704394 (+)
G1404827 NA other upstream 211353 69364521 ~ 69369376 (+)
G1404785 NA other upstream 327020 69245545 ~ 69253709 (+)
G1404700 NA other upstream 467379 69109714 ~ 69113350 (+)
G1404281 LOC106566460 other upstream 898752 68681446 ~ 68681977 (+)
G1405218 NA other downstream 2363 69585989 ~ 69586906 (+)
G1405310 LOC106566443 other downstream 87838 69671464 ~ 69672674 (+)
G1405605 LOC106566425 other downstream 546295 70129921 ~ 70132301 (+)
G1405676 NA other downstream 673196 70256822 ~ 70257430 (+)
G1406381 NA other downstream 1385989 70969615 ~ 70972604 (+)

Expression


Co-expression Network