G1405240


Basic Information

Item Value
gene id G1405240
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69638510 ~ 69639633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1604897
gtatgTAACTCATAGAGGAGCAGCACCAGTATGTAACTCATAGAGGAGCAGTACCAGTATGTATCTCATAGAGGAGCAGTACCAGTATGTAACTCATAGAGGAGCAGTACCAGTATGTAACTCATAGAGGAGCAGTACCAGTATGTAACTCATAGAGGAGCAGTACCAGTATGTAACTCATAGAGGAGCAGTACCAGTATGTATCTCATAGAGGAGCAGTACCAGTATGTATCTCATAGAGGAGCAGTACCAGTATGTATCTCATAGAGGAGCAGTACCAGTATGTATCTCATAGAGGAGCAGTACCAGTATGTATCTCATATAGGAGCAGTACCAGTATGTATCTCATACAGGAGCAGTACCAGTATGTAACTCATAGAGGAGCAGTACCAGTATGTATCTCATACAGGAGCAGTACCAGTATGTATctcatagaggaggaggagcagcatcCTGACTAGAGCATGATAACGATTCAGAATTTGACAGAGTAatctgacgcacacacacaacacagcacagtcacacaacacacaccacacagtcacacaacacacagtcacacaacacacagtcacacaacacacacagtcacacagtcacacacaccacacagttac

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1604897 True 620 lncRNA 0.44 5 69638510 69639633

Neighbor

gene id symbol gene type direction distance location
LOC118939480 NA coding upstream 209669 69428060 ~ 69428841 (+)
LOC110492642 LOC106566441 coding upstream 290955 69313323 ~ 69347555 (+)
fkbp1ab LOC100705189 coding upstream 326306 69305670 ~ 69312263 (+)
LOC110492640 mfsd2 coding upstream 333118 69289013 ~ 69305392 (+)
LOC110492639 LOC106566439 coding upstream 356895 69277801 ~ 69281615 (+)
LOC110492656 LOC106566444 coding downstream 53389 69693022 ~ 69696403 (+)
LOC110492659 LOC106566420 coding downstream 346544 69986177 ~ 69996398 (+)
LOC118939577 LOC106566421 coding downstream 403615 70043248 ~ 70069326 (+)
LOC110492657 hck coding downstream 439060 70078693 ~ 70095267 (+)
LOC110492652 LOC106566422 coding downstream 456816 70096449 ~ 70111837 (+)
G1405214 NA non-coding upstream 65407 69572402 ~ 69573103 (+)
G1405203 NA non-coding upstream 96122 69542174 ~ 69542388 (+)
G1405198 NA non-coding upstream 99199 69538809 ~ 69539311 (+)
G1405188 NA non-coding upstream 107174 69531125 ~ 69531336 (+)
G1405171 NA non-coding upstream 120548 69517597 ~ 69517962 (+)
G1405245 NA non-coding downstream 10114 69649747 ~ 69652316 (+)
G1405325 NA non-coding downstream 59224 69698857 ~ 69699511 (+)
G1405331 NA non-coding downstream 64549 69704182 ~ 69704394 (+)
G1405344 NA non-coding downstream 99263 69738896 ~ 69768630 (+)
G1405349 NA non-coding downstream 108094 69747727 ~ 69748528 (+)
G1405218 NA other upstream 51604 69585989 ~ 69586906 (+)
G1405216 NA other upstream 54884 69580729 ~ 69583626 (+)
G1404827 NA other upstream 269134 69364521 ~ 69369376 (+)
G1404785 NA other upstream 384801 69245545 ~ 69253709 (+)
G1405310 LOC106566443 other downstream 31831 69671464 ~ 69672674 (+)
G1405605 LOC106566425 other downstream 490288 70129921 ~ 70132301 (+)
G1405676 NA other downstream 617189 70256822 ~ 70257430 (+)
G1406381 NA other downstream 1329982 70969615 ~ 70972604 (+)
G1406424 NA other downstream 1562809 71202442 ~ 71206092 (+)

Expression


Co-expression Network