G1405400 (LOC106566443)


Basic Information

Item Value
gene id G1405400
gene name LOC106566443
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69675532 ~ 69679622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1605088
CAGTAATAGAAGTCTGCATACTAGTTTACATATTACGAGTTACACCCCCTAGCTAGGATAGTGGctgattattatattatattacgaGTTACACCCCCTAGCTAGGATAGTGGCTGGTTTCTAACATAAAATTCCATGTAGGTGTCCAGTCCTAAGTTATTAAAGGGGAATATCAGAACAATCTTTTGGTATTTCAGTGATGTGGCTGGAGACATgttgcttcttgaaagtccagAAATCTTGACagcttgactgctgacatgcaaaacatttcgAGACTGTGTTATTAACAGTGTCCAACCTGGCTACTGCAACTAGTTCACAGTAAATCAAATTGTCTTAAAGGCACATACACCAATTATGCAAAATCAGGGTAAAGTGATAGACCATTTTATTTGTCAAGTTCTCTGCACACAAGCTATAATAAATATGTGAAGGTGAGGAAGATGATAAACGTTATGAAAAGCCTCACCCTAATCTGAAATAGACATTGTTCATTATAAAAACACAAGTCAACAAGTATGAAATAATTTGATATATGTACAAAAAATGCATATTTACAAGATAGTAAAGTGTTAAACCCAAAACACACACTGTTTATATCACAGGGTTGTGTTGATGTAAAATCTCATTAACTCAATGTGAAATCTGAATCCTAATCAAAACGCCTGCCCCCTAGTGTCATTCAGTAGTTCCCTTAATGCAGTTTTGAAAAGTTAAAGGTTTAAAAGTCAATGTACAGGTGGCATGTTAAATAAAATGTGAGACACGATGATGTGTGTTTAACGAAAGCATTTAGAGAAGCATGTCAAAACTCCCTTTGATTCTGATCAATCCCATGACCAATATCATAATTTCTGCCACTTTGTGTGTCAAAATTACTTGTAGGTTGTTTTACTTTGATGTGACTGGATCTATGATAAGCAGATCCATACCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGACTACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGCAGACTGTCAGGGGATCTATGATAAGCAGATCAATACCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGACTGTCAGAGGGTCTATGATAAGCAGATCAATACCAGCAGATTGCCAGGGGGTCTATGATAAGCAGATCAATACCAGCAGATTGCCAGGGGGTCTATGATAAGCAGATCAATACCAGATTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGATTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGATTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGCAGACTGTCAGGGGGTCTAGGATAAGCAGATCAATACCATCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGCAGATTGCCAGGGGGTCTATGATAAGCAGATCAATACCAGCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCATCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGCAGACTGTCAGGGGGTCTATGATAAGCAGATCAATACCAGCAGACTGTCAGGGGGTCAGAATCTACTCCATCACATTCACCAATGTTGAAATAGGCTGACACGTCTTCCCAATAACAGACTAGAGTATAGATAAGCGACATGTCATCTGCATTGTAGAAAGAGAGTTCCTTGGTTGCACAACTTAGGTATAGAGCTATCTTTCGAGGTGTATCTCGTAAAAGGATTTGTTTTTCAGTACCCATACCGTGAACAGTATATTTTTGATTTCTATACCTGAGACACATTGTTTTTGAACCAAAAAGTTTCAACCCAAAAATCCCCGAAGTTTTTTTAACTCCCAGTTCCCAGAAAGCCCCACTTCCCACTTCTATTTCCCAGCAGTGAGGTCCAGTGCTGAACTTACTGTTACTCAGTAATTTTGATTGTTGTGATTGATGTCGAGCTGAATGAGCTGATTCCGCATTTCTGGGAGTACAAAACACACTGCGTCTGTCATTGGAGATAGTCAGTTTCTGACTCAATGTTTGTAGTGTTAGTCTCTCTGGAAGAGGATTGATTACTTGCAGCATCTCCTTCCACACAAAGAACTGCAGGTGAGACTCATAgggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcaCCTTTAGGTCAGGCTCATAGGACCCaatagagagacggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagacggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagacagagacaggtgtgacctttaggtcagactcatagggccccagagagagggagacaggtgccacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcataggaccccagagagacggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagacggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagagggagacaggtgtcacctttaggtcagactcatagggccccagagagacggagacaggtgtGACATTTAGGTCAGACTCATAgggccccagagagagggagacaggtgtcacctttaggtcagactcatagggcc

Function

NR:

description
PREDICTED: nuclear factor 7, brain-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1605088 True 3351 lncRNA 0.46 4 69675532 69679622

Neighbor

gene id symbol gene type direction distance location
LOC110491172 LOC106566442 coding downstream 9515 69577674 ~ 69666017 (-)
LOC118939576 NA coding downstream 99689 69571853 ~ 69575843 (-)
LOC110491170 LOC106566448 coding downstream 169516 69470416 ~ 69506016 (-)
LOC110492644 LOC106566447 coding downstream 296351 69354502 ~ 69379181 (-)
LOC110492636 LOC106566437 coding downstream 552066 69113016 ~ 69123466 (-)
LOC118936543 LOC106566425 coding upstream 447631 70127253 ~ 70133280 (-)
LOC118939578 NA coding upstream 505753 70185375 ~ 70187858 (-)
LOC110492660 LOC106566428 coding upstream 536916 70216538 ~ 70221552 (-)
LOC110492649 LOC106566409 coding upstream 550217 70229839 ~ 70282239 (-)
tmed4 LOC106566412 coding upstream 742807 70422429 ~ 70426035 (-)
G1405402 NA non-coding downstream 1114 69673676 ~ 69674418 (-)
G1405401 LOC106566443 non-coding downstream 1982 69672003 ~ 69673550 (-)
G1405297 NA non-coding downstream 18443 69656722 ~ 69657089 (-)
G1405292 NA non-coding downstream 30686 69644019 ~ 69644846 (-)
G1405281 NA non-coding downstream 56096 69612436 ~ 69619436 (-)
G1405403 LOC106566444 non-coding upstream 15612 69695234 ~ 69697051 (-)
G1405411 NA non-coding upstream 24389 69704011 ~ 69704362 (-)
G1405412 NA non-coding upstream 25234 69704856 ~ 69705114 (-)
G1405413 NA non-coding upstream 26003 69705625 ~ 69705862 (-)
G1405414 NA non-coding upstream 26906 69706528 ~ 69706883 (-)
G1405172 NA other downstream 157419 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 395173 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 468374 69203286 ~ 69207158 (-)
LOC118939478 LOC106566484 other downstream 880507 68791189 ~ 68795025 (-)
G1403498 NA other downstream 2231353 67443421 ~ 67444179 (-)
G1405917 NA other upstream 399035 70078657 ~ 70095541 (-)
G1406228 NA other upstream 1056025 70735647 ~ 70742179 (-)
G1406514 NA other upstream 1580700 71260322 ~ 71260817 (-)
G1406752 NA other upstream 1822857 71501118 ~ 71547366 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_04044171_04047247 TRIM108 coding CI01000016 null 4044015 ~ 4047305 (-)