G1405360


Basic Information

Item Value
gene id G1405360
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69805642 ~ 69812399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1605039
ctctctctctctctatccctccctctccctctctatctctccctctctctcggtctctctctctcactctccctctctctctctctctccctctctatctctctctctccctctctatctccccctctctctccctctctctccctctctctccctctctcttggtctctctctctctccctctctctccctctccctctttctccctctctctccctctctcgcggtctctctctctcttggtctctctctctctccctctctctctctctctctctctctctctctctcggtctctctctctctctccctcgttctccgtctctctcgctctctctctccctctctctccctctctctcggtctctctctctctctctgtctctctccctcgctctccctctctctctctctctctctctctctctctctctctctctttccctctctctctccctctctctcaccctctctctccctctctctctctttctctctctccctctctctccctctctcttggtctctctctctctctctctctctctctctccctctctccctctcactgccGTTATCGCTCAATATGAATGGCATTGGAAACATATGTTAGTAAAATGTTACAGTTAACATTACACTGACAGCGGTTTGACAAGAATAAATTAATTTCTAATgtcattatgtgcaaatagttaaaaataaaatctctctctgtctgtctgagcgaCCTGTCTGTAGGGCGACCTGCCTGTAGAACAACCTGTCTGTAGAACCTCCTGTCTGTAGGGCGACCTGTCTGTAGGGCGACCTGCCTGTAGAACAACCTGTCTGTAGGGCGACCTGCCTGTAGAACAACCTGTCTGTAGGGCGACCTGTCTGTAGGGCGACCTGTCTTAGAGCGACCTGTCTGTAGAGCCTGTCTGTTCAAATCAACCTTCACTTGCCACAATAAATTGTCCTTTCGCATCAACACACTATGGgcaccccctcacacacacatacagtacactgtaAACTCACTGAGCTCTCTTACTGTAAACTCTCTGTGCTCACTTACTGTAAACTCACTGAGCTCTCTTACTGTAAACTCACTGTGCTCTCTTACTGTAAAGTCCCTGTGCTCTCTTACTGTAAACTCACTGAGCTCTCTTACTGTAAACTCACTGAGCTCTCTTACTCTAGACTCAATGACCTCTCTTACTGTAAACTCACTGTGCTCTCTTACTGTAAACATACTGAGCTCTCTTACTGTAAACTCACTGAGTTATCTTATTGTAAACTCACTGAGCTCTCTTACTGTAGACTCAATGAGCTCTCCCAGAGTGCATTTTAGTCAggtcatccttgatgtttcttaCTGTAGACTCACTGAGTCTCCCAGAGTGCATTGCAGTCAGGTAATCTCTGATGTGTCTTACTGTTGAGTCAATGAGCTCTCCCAGAACGCATTGCAGTCAGGTCATCTCTGATGTGTCTTTTCATGCATTTCAGATGCAGATTGTCTCTGATTGGCTAGACAGTCAGTCTGTGGCCCGTTTGGTTCCTGTCACGCATGCCACTTTGTGACAGCGAAGGCTACTGTCTTTTTAGAAGTTAAAAAGATCTCTGACCAAATCCGATCAGCAGCTTTGTCCATGAGTGATCATCAGCTAAACGTTGACAGTGTATAACTACAACCCAGGTGAGGTCAAGCACTGTGACTTTTCCCAGAACAGGCTTGAAGAACAGAACCACCTCAAAACACAGGTAACCGTACTCAGAAAGATGAAGTATCTACTGTCCATCCAAACCAGGCCTAATGACTAGGCCCAAAACAGTGCAATTACCTACAGCCAGACAGAAGACTCTGTGACCACACCGCAGTCATCAGACAGTCAATCATTTGGTGTTAGAGCTACTGTACCAGTCTGAGCTCAGCGTCAGATCCTGCCTGCTGATGGAGCCTGTGGTAGGTATCCATTAGTAAGCAGTCTGAGCTCAGCGTCAGATCCTGCCTGCTGATGGAGCCTGTGGTAGGTATCCATTAGTAAGCAGTCTGAGCTCAGCGTCAGATCCTGCCTGCTGATGGAGCCTGTGGTAGGTATCCATTAGTAAGCAGTCTGAGCTCAGCGTCAGATCCTGCCTGCTGATGGAGCCTGTGGTAGGTATCCATTAGTAAGCAGTCTGAGCTCAGCGTCAGATCCTGCCTGCTGATGGAGCCTGTGGTAGGTATCCATTAGTAAGCAGTCTGAGCTCAGCGTCAGATCCTGCCTGCTGATGGAGCCTGTGGTAGGTATCCATTAGTAAGCAGTCTGAGCTCAGCGTCAGATCCTGCCTGCTGATGGAGCCTGTGGTAGGTATCCATTAGTAAGCATTTGTTCACTGCGTCATTACCTGGAAACTAAACTGCTGTCTATGTGCGTCTCCATCACCCAACACACAAACGAGGTTTCccattgctgtttttttttaggGGCAAGAACAGGGGGGGAAATGTGTGAGGAGGTATTCCATCGCAGTATGACGGACACCCCTGTTTTCAGAACGATAGAAATAAATGAGATAAATTACATGTCTGAAATATTCAGACCAGATGAAAAGTGCTGACGCTGATTCTCTGCACCTCCATAAAGCCTCGTCTCTGCAGTACGAGGCAGATTGGACTCAACCGAACCAGAACAGAGCGGAAAAACTGCGTGTGTGCCATCTCTTTAAATActcacacagatatacacacacacaggaacacgaaggaacacacgcacgcacacacgcacgcacgcacacacacacacacacacacacacacacacacacagatacacacacacacacacatacacacacacacacacacacacacaggaacacaaaggaacacacacacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacagatacacacacacacaggaacacaaaggaacacacacacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacaaacgtTCAACATAAGCGCACGAaaatagatgcacacacacacacggctaacatgcagaaagtattcaggcccttgcTAAGGTCAGAGGTCATAATATTTAAAGCTCTGTGTAACTTtgggttgtgtgtgttttctcctacCTGGGATACATACTTCTTTACATTCCATAGTTCCTCTTGTTCATATGGACGCATAAAGAAGTATGTCCCCCAAGCAGGTAATGCTCCTTTTTTGCGCATTGgtttctctccaccctctctctctctctctctctctctctctctctctctccatctctctctctctctctctccatctctctctccatctctctctcaatctctctcgctctctctctctctctctctctctctctctctccatctctctctccaactctctctccatctctctctctctctctctctctctctctctctctctctctctctctcactctctctgttgaATCAGGGTCCCAGGCCGGTCCTTACCGCATGACAACCTCCCTCCCCATTATAAGGGTCCCAGTCGGAGAGAAGAACAGACCCTCACCCCTCCGCCATCCCCACACTCAAATTCCAAAGGCATTAATTCATAAGAATCTGAGGCATCAGCTTTTACACTACTCCAACTGTGGTGTACATGAACAAATCTTCTTGTTTCAGTTTAA
>TU1605042
ctctctctctctctatccctccctctccctctctatctctccctctctctcggtctctctctctcactctccctctctctacctctcactccctctctctctctccctctctctctctctctccctctctctcggtctctctccctctcccaatctctctctccccctctctctctctctctctctctccctctcgctccctctctctaggtctctctcggtctctctccctctccccctctctctctccctctctctctctctcgctctctctccctctctctctgtctctctctctcactctcccgctctctccctctctctcccccaatctctctctctccctctctctccctctctctctttctcggtctctctctctctccctctctctccctctctctctctccctctctctccctctctctcggtctctctctctatctctctccctctctccctctctctctctccctctctctctctttctctccctccctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1605039 False 3706 lncRNA 0.48 5 69805642 69812399
TU1605042 True 502 lncRNA 0.57 2 69805642 69808715

Neighbor

gene id symbol gene type direction distance location
LOC110492656 LOC106566444 coding upstream 109239 69693022 ~ 69696403 (+)
LOC118939480 NA coding upstream 376801 69428060 ~ 69428841 (+)
LOC110492642 LOC106566441 coding upstream 458087 69313323 ~ 69347555 (+)
fkbp1ab LOC100705189 coding upstream 493438 69305670 ~ 69312263 (+)
LOC110492640 mfsd2 coding upstream 500250 69289013 ~ 69305392 (+)
LOC110492659 LOC106566420 coding downstream 173778 69986177 ~ 69996398 (+)
LOC118939577 LOC106566421 coding downstream 230849 70043248 ~ 70069326 (+)
LOC110492657 hck coding downstream 266294 70078693 ~ 70095267 (+)
LOC110492652 LOC106566422 coding downstream 284050 70096449 ~ 70111837 (+)
LOC110492666 NA coding downstream 379393 70191792 ~ 70194430 (+)
G1405366 NA non-coding upstream 8811 69795570 ~ 69796831 (+)
G1405344 NA non-coding upstream 37012 69738896 ~ 69768630 (+)
G1405357 NA non-coding upstream 38898 69765853 ~ 69766744 (+)
G1405356 NA non-coding upstream 40051 69764994 ~ 69765591 (+)
G1405352 NA non-coding upstream 46633 69757867 ~ 69759009 (+)
G1405480 NA non-coding downstream 68840 69881239 ~ 69881523 (+)
G1405481 NA non-coding downstream 70348 69882747 ~ 69882997 (+)
G1405493 NA non-coding downstream 94711 69907110 ~ 69907323 (+)
G1405499 NA non-coding downstream 99340 69911739 ~ 69912241 (+)
G1405511 NA non-coding downstream 111215 69923614 ~ 69923826 (+)
G1405310 LOC106566443 other upstream 132968 69671464 ~ 69672674 (+)
G1405218 NA other upstream 218736 69585989 ~ 69586906 (+)
G1405216 NA other upstream 222016 69580729 ~ 69583626 (+)
G1404827 NA other upstream 436266 69364521 ~ 69369376 (+)
G1405605 LOC106566425 other downstream 317522 70129921 ~ 70132301 (+)
G1405676 NA other downstream 444423 70256822 ~ 70257430 (+)
G1406381 NA other downstream 1157216 70969615 ~ 70972604 (+)
G1406424 NA other downstream 1390043 71202442 ~ 71206092 (+)
G1406505 NA other downstream 1397873 71210272 ~ 71210764 (+)

Expression


Co-expression Network