G1405918


Basic Information

Item Value
gene id G1405918
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70112899 ~ 70113881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1605769
TTCCAACGAATCAGCACTTTAATTGTTTCATACATTATATAACTGGACATTCTGTAAAGAAAACGTGGGGAAAAAAAGACAAATAAAAAGTTTCTTAAAAACCATGCACATGATCTTTATACATACAGTCAGAGCCCCAcaacaggagagaaaaaaaaaaaaaaacagcgcTTTGCATTTACATACATAGCAGActgtcattcacacacacacacacacacacacacacacacatacatacacagctCATGTCAATCAAAAGAACATCTGTAGAAATTCTCTCTCCTGAAATTTTGTTTGATGGGCCCAGGTGAGGAAGTCCGTCTGTGGATCAGGAACACTTTCAGACACTGGCAGAGGGGAGGAAAAGGCCGATGGGATAATGTAGAggtgaatgtgagagagagatggctgaTGGGATAATGTAGAggtgaatgtgagagagagagatggctgatGGGATAATGTAGTggtgaatgtgagagagagagatggctgatGGGATAATGTAGCGGGGAATGTGAGAGATGGCTGATGGGATAATGTAGAGGTGAATGTGAGAGAGGGATGGCTGATGGGATAATGTAGAGATGAAtgtgagagagatgcagagaaaagCTGTTAAGGGAGAGTGGagacaggaggcagagagaggtatgATTCATTCAGTGGTTCACTGTATTATCATTCACCCAGAATGGAGTAATTCCCTCTCAGCACCggttccctccctttccctctcagcACCggttccc
>TU1605773
atagagacaacacgacaatgtgtaatctgataccaacccccaagacacacagcatagagacaacacgacaatgGCACTTCAGCATTACTCTGGCTTTATCTAGTGAATGTAAAATGAACACGCAGAAAATCCCAGCAGACAACCATTTATGGCATAAATGAATAGATTAAAAAAAGGAGACATTCAAATTCCAACGAATCAGCACTTTAATTGTTTCATACATTATATAACTGGACATTCTGTAAAGAAAACGTGGGGAAAAAAAGACAAATAAAAAGTTTCTTAAAAACCATGCACATGATCTTTATACATACAGTCAGAGCCCCAcaacaggagagaaaaaaaaaaaaaaacagcgcTTTGCATTTACATACATAGCAGActgtcattcacacacacacacacacacacacacacacacatacatacacagctCATGTCAATCAAAAGAACATCTGTAGAAATTCTCTCTCCTGAAATTTTGTTTGATGGGCCCAGGTGAGGAAGTCCGTCTGTGGATCAGGAACACTTTCAGACACTGGCAGAGGGGAGGAAAAGGCCGATGGGATAATGTAGAggtgaatgtgagagagagagatggctgatGGGATAATGTAGTggtgaatgtgagagagagagatggctgatGGGATAATGTAGCGGGGAATGTGAGAGATGGCTGATGGGATAATGTAGAGGTGAATGTGAGAGAGGGATGGCTGATGGGATAATGTAGAGATGAAtgtgagagagatgcagagaaaagCTGTTAAGGGAGAGTGGagacaggaggcagagagaggtatgATTCATTCAGTGGTTCACTGTATTATCATTCACCCAGAATGGAGTAATTCCCTCTCAGCACCggttccctccctttccctctcagcACCggttccc
>TU1605774
TTCCAACGAATCAGCACTTTAATTGTTTCATACATTATATAACTGGACATTCTGTAAAGAAAACGTGGGGAAAAAAAGACAAATAAAAAGTTTCTTAAAAACCATGCACATGATCTTTATACATACAGTCAGAGCCCCAcaacaggagagaaaaaaaaaaaaaaacagcgcTTTGCATTTACATACATAGCAGActgtcattcacacacacacacacacacacacacacacacatacatacacagctCATGTCAATCAAAAGAACATCTGTAGAAATTCTCTCTCCTGAAATTTTGTTTGATGGGCCCAGGTGAGGAAGTCCGTCTGTGGATCAGGAACACTTTCAGACACTGGCAGAGGGGAGGAAAAGGCCGATGGGATAATGTAGAggtgaatgtgagagagagatggctgaTGGGATAATGTAGAggtgaatgtgagagagagaGATGGCTGATGGGATAATGTAGAGGTGAATGTGAGAGAGGGATGGCTGATGGGATAATGTAGAGATGAAtgtgagagagatgcagagaaaagCTGTTAAGGGAGAGTGGagacaggaggcagagagaggtatgATTCATTCAGTGGTTCACTGTATTATCATTCACCCAGAATGGAGTAATTCCCTCTCAGCACCggttccctccctttccctctcagcACCggttccc
>TU1605775
atagagacaacacgacaatgtgtaatctgataccaacccccaagacacacagcatagagacaacacgacaatgGCACTTCAGCATTACTCTGGCTTTATCTAGTGAATGTAAAATGAACACGCAGAAAATCCCAGCAGACAACCATTTATGGCATAAATGAATAGATTAAAAAAAGGAGACATTCAAATTCCAACGAATCAGCACTTTAATTGTTTCATACATTATATAACTGGACATTCTGTAAAGAAAACGTGGGGAAAAAAAGACAAATAAAAAGTTTCTTAAAAACCATGCACATGATCTTTATACATACAGTCAGAGCCCCAcaacaggagagaaaaaaaaaaaaaaacagcgcTTTGCATTTACATACATAGCAGActgtcattcacacacacacacacacacacacacacacacatacatacacagctCATGTCAATCAAAAGAACATCTGTAGAAATTCTCTCTCCTGAAATTTTGTTTGATGGGCCCAGGTGAGGAAGTCCGTCTGTGGATCAGGAACACTTTCAGACACTGGCAGAGGGGAGGAAAAGGCCGATGGGATAATGTAGAggtgaatgtgagagagagatggctgaTGGGATAATGTAGAggtgaatgtgagagagagaGATGGCTGATGGGATAATGTAGAGGTGAATGTGAGAGAGGGATGGCTGATGGGATAATGTAGAGATGAAtgtgagagagatgcagagaaaagCTGTTAAGGGAGAGTGGagacaggaggcagagagaggtatgATTCATTCAGTGGTTCACTGTATTATCATTCACCCAGAATGGAGTAATTCCCTCTCAGCACCggttccctccctttccctctcagcACCggttccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1605769 False 755 lncRNA 0.43 2 70112899 70113693
TU1605773 False 903 lncRNA 0.42 2 70112899 70113881
TU1605774 False 677 lncRNA 0.43 2 70112899 70113693
TU1605775 True 865 lncRNA 0.42 2 70112899 70113881

Neighbor

gene id symbol gene type direction distance location
LOC110491172 LOC106566442 coding downstream 446882 69577674 ~ 69666017 (-)
LOC118939576 NA coding downstream 537056 69571853 ~ 69575843 (-)
LOC110491170 LOC106566448 coding downstream 606883 69470416 ~ 69506016 (-)
LOC110492644 LOC106566447 coding downstream 733718 69354502 ~ 69379181 (-)
LOC110492636 LOC106566437 coding downstream 989433 69113016 ~ 69123466 (-)
LOC118936543 LOC106566425 coding upstream 13372 70127253 ~ 70133280 (-)
LOC118939578 NA coding upstream 71494 70185375 ~ 70187858 (-)
LOC110492660 LOC106566428 coding upstream 102657 70216538 ~ 70221552 (-)
LOC110492649 LOC106566409 coding upstream 115958 70229839 ~ 70282239 (-)
tmed4 LOC106566412 coding upstream 308548 70422429 ~ 70426035 (-)
G1405954 NA non-coding downstream 5937 70104852 ~ 70106962 (-)
G1405920 NA non-coding downstream 75508 70034724 ~ 70037391 (-)
G1405912 NA non-coding downstream 86414 70024699 ~ 70026485 (-)
G1405907 NA non-coding downstream 96743 70014596 ~ 70016156 (-)
G1405555 NA non-coding downstream 135088 69976709 ~ 69977811 (-)
G1405933 NA non-coding upstream 12170 70126051 ~ 70126294 (-)
G1405919 NA non-coding upstream 20889 70134770 ~ 70135100 (-)
G1405958 NA non-coding upstream 23506 70137387 ~ 70137737 (-)
G1405985 NA non-coding upstream 109281 70223162 ~ 70226004 (-)
G1406075 NA non-coding upstream 275727 70389608 ~ 70394300 (-)
G1405917 NA other downstream 17358 70078657 ~ 70095541 (-)
G1405172 NA other downstream 594786 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 832540 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 905741 69203286 ~ 69207158 (-)
LOC118939478 LOC106566484 other downstream 1317874 68791189 ~ 68795025 (-)
G1406228 NA other upstream 621766 70735647 ~ 70742179 (-)
G1406514 NA other upstream 1146441 71260322 ~ 71260817 (-)
G1406752 NA other upstream 1388598 71501118 ~ 71547366 (-)
G1406760 NA other upstream 1426077 71539958 ~ 71543469 (-)

Expression


Co-expression Network