XLOC_033048 (ccdc174)


Basic Information

Item Value
gene id XLOC_033048
gene name ccdc174
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40429773 ~ 40435025 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064225
GGGACAGCAGATGGCAGACCAGATTTCTCCTCGTCTGGATTGTTCTGAGATGCTGTTTTCCTCTCACTTTGTCAGCGGTTTAGACTGCATTAAATGTTAAATGGATAAAAAGAAGCAGCCATACAGTGTAACAGCGTCTTCGCTGGTTGATTTGAAAGCGGAATTATATCGGAAACAAGAGCAATTTAAGCACGACAGACTTGGCCAAGATGCTGGAGGAGGTGCACAGAAGTCCAAGACCAAGATAAAAAAGCCTAATATCTGGAGTAAACAGAATGAAGGAGTCAATGCTCGAGCTCAGAAAGACGTTCAGCAAACGGCTGAAGAAGAAAACACACTAGATAAATCTAGGCAAAAACTGGAGGAAAAGGCACGTCTTTATGAACAAATGACGAAAGGAGATTTCCCAGatGAGGAGACAGAAAGTCTTTTTCTGGTGGACTTCACCCAGAAGATCATTAACCAAAGGAATGAGCCACAGACACGCACTGCAGATCGAGATGGAGAGGACTCTGATGTAAAAGTCCCTGTTCCACCTCCACAGAACACAAATGAGGAATGGGTGGACTATGTTGATGCGTTAGGACGTTCTCGAAGATGTCTGAGGAAAGACCTACCAGATTTTCAGAAAATGGATGAAGATCTTCACAATAAGAGGGTGACTGGCGCTGACAGACACCTGTTATCTGAAGACATGAGGAGAGAAATGCAGAGAGAGGAGTGGGAGAGAGAGGAAGAGGAGCAGATGAAGAGGCCTGTCGGACCTATTCACTATGAAAATATTAGAGACCAAGAGGCCAGAGAGCTGGGAGTTGGGTATTTTGCTTTTGCTCATGATGAAGACCAACGCAGAAAACAGAGAGAAACTTTGGACATGCTGAGAGACCAGACCACAGAGCAGCGCAGCAAACGAGAGCAGCTGAAAGAGAAGCGGAAAGCTCTGCTTGAGGCCCGGCTTGCTAAAGTGAGAATGAGAAGGATGAAGAATGGCAAGATGGAGCCAGGGGATGAACAAGTTGCTCCTGCTGCTGATGTTGCTGAGATTGATGAAGATGACAAAGATGAAGATTTGGTTGGACCTCCAGCACCTGCAAAAGTGCCGAAAGTGGAGGTGGAAATTCAGGAGAGAAAAGACACCAAACCTGGTGTTCCTCATGTAAGAGAATGGGACAGAGGCAAAGAGTTCTCCTGGGGTCAGTGGACCAGTCGGCGTCGAGAGGAGCGAGACTCAGAGTTTGCTCCTCCCTCTGCTTATTTTGCAGAGGACAGAAGGGCAAATCACAGCAGAGCAGGGCAGAGCAAAGGAAAACATGGCTTCAAGTGGCCTGAATCCCAAAACGCAGCAGAAAGACACACAGAAGATAACACATCTAACCCTATATATGCTTCTGAGATGCCCACATATACACAACCTTCTCAAACACAGACTGCTCAAACACAGAGTCTGGATGACCTGCTGTCCTACTACAAACACTCCACATGAACAAGTGCAAGCCAAAAAATCATGTGGTAACTAAAGAAACTGCTTCTGATTGGATGTGTTATTTTCAAAAGGGACTATTGAACTGTATAAACATGTAACTTAAATGCTACAATAGAATAAAGTTTGAGCAGA
>TCONS_00064226
TCTGAGATGCTGTTTTCCTCTCACTTTGTCAGCGGTTTAGACTGCATTAAATGTTAAATGGATAAAAAGAAGCAGCCATACAGTGTAACAGCGTCTTCGCTGGTTGATTTGAAAGCGGAATTATATCGGAAACAAGAGCAATTTAAGCACGACAGACTTGGCCAAGATGCTGGAGGAGGTGCACAGAAGTCCAAGACCAAGATAAAAAAGCCTAATATCTGGAGTAAACAGAATGAAGGAGTCAATGCTCGAGCTCAGAAAGACGTTCAGCAAACGGCTGAAGAAGAAAACACACTAGATAAATCTAGGCAAAAACTGGAGGAAAAGGCACGTCTTTATGAACAAATGACGAAAGGAGATTTCCCAGatGAGGAGACAGAAAGTCTTTTTCTGGTGGACTTCACCCAGAAGATCATTAACCAAAGGAATGAGCCACAGACACGCACTGCAGATCGAGATGGAGAGGACTCTGATGTAAAAGTCCCTGTTCCACCTCCACAGAACACAAATGAGGAATGGTACGATGTGTATTACGGTACAACGTCTTatgagatttaaaatattttttggactCTGAACTGTGGATTTTCTGTGCTCTCTCAATTGCAGGGTGGACTATGTTGATGCGTTAGGACGTTCTCGAAGATGTCTGAGGAAAGACCTACCAGATTTTCAGAAAATGGATGAAGATCTTCACAATAAGAGgtgcct
>TCONS_00064227
AAAGAAGCAGCCATACAGTGTAACAGCGTCTTCGGTCAGTCTTTTTTTTATCTCTATGGTAAAATACTCTTTTTAAACAGATCTCGAGGGGAGTATttgagctgtttttgttttttagttaacGTTAGCTTAGCTGGCAGGATTACATTTGGTGGCAGTTTTCGAATCAATTAAACATCTCGTCTAATGTCtacatttgattttcatttcaGCTGGTTGATTTGAAAGCGGAATTATATCGGAAACAAGAGCAATTTAAGCACGACAGACTTGGCCAAGATGCTGGAGGAGGTGCACAGAAGTCCAAGACCAAGATAAAAAAGCCTAATATCTGGAGTAAACAGAATGAAGGAGTCAATGCTCGAGCTCAGAAAGACGTTCAGCAAACGGCTGAAGAAGAAAACACACTAGATAAATCTAGGCAAAAACTGGAGGAAAAGGCACGTCTTTATGAACAAATGACGAAAGGAGATTTCCCAGatGAGGAGACAGAAAGTCTTTTTCTGGTGGACTTCACCCAGAAGATCATTAACCAAAGGAATGAGCCACAGACACGCACTGCAGATCGAGATGGAGAGGACTCTGATGTAAAAGTCCCTGTTCCACCTCCACAGAACACAAATGAGGAATGGTACGATGTGTATTACGGTACAACGTCTTatgagatttaaaatattttttggactCTGAACTGTGGATTTTCTGTGCTCTCTCAATTGCAGGGTGGACTATGTTGATGCGTTAGGACGTT

Function

symbol description
ccdc174 Predicted to be active in nucleus. Orthologous to human CCDC174 (coiled-coil domain containing 174).

GO: NA

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050320-54 Predicted to be active in nucleus. Orthologous to human CCDC174 (coiled-coil domain containing 174).

Ensembl:

ensembl_id ENSDARG00000023858

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064225 False 1615 mRNA 0.45 11 40429773 40435025
TCONS_00064226 False 711 lncRNA 0.42 5 40432360 40434982
TCONS_00064227 True 751 lncRNA 0.41 4 40432433 40434917

Neighbor

gene id symbol gene type direction distance location
XLOC_033047 si:dkey-28n18.9 coding downstream 359 40422224 ~ 40429414 (-)
XLOC_033046 NA coding downstream 20648 40383424 ~ 40409125 (-)
XLOC_033045 ttll3 coding downstream 77558 40329308 ~ 40352215 (-)
XLOC_033044 col7a1 coding downstream 117682 40184235 ~ 40312091 (-)
XLOC_033043 NA coding downstream 247253 40173228 ~ 40182520 (-)
XLOC_033049 tatdn2 coding upstream 4833 40439858 ~ 40449399 (-)
XLOC_033050 vhl coding upstream 16245 40451270 ~ 40455109 (-)
XLOC_033051 crbn coding upstream 21773 40456798 ~ 40466861 (-)
XLOC_033052 NA coding upstream 42405 40477430 ~ 40482198 (-)
XLOC_033053 tomm6 coding upstream 137520 40572545 ~ 40573270 (-)
XLOC_033038 NA non-coding downstream 385662 40038692 ~ 40044111 (-)
XLOC_033025 CU467856.1 non-coding downstream 904268 39524924 ~ 39525505 (-)
XLOC_033024 NA non-coding downstream 907941 39491846 ~ 39521832 (-)
XLOC_033055 CU855953.1 non-coding upstream 190279 40625304 ~ 40625420 (-)
XLOC_033056 NA non-coding upstream 190606 40625631 ~ 40629161 (-)
XLOC_033058 dre-mir-429b non-coding upstream 218104 40653129 ~ 40653238 (-)
XLOC_033059 dre-mir-141 non-coding upstream 220978 40656003 ~ 40656085 (-)

Expression


Co-expression Network