G1406075


Basic Information

Item Value
gene id G1406075
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70389608 ~ 70394300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1606013
TCCATTTAAGGCTAAAACCAGTATTGACTACAGAAGCATTGAACTGAATGAAAACATTATTGGCCAAATAGTTTGGCATTGAAGATAAGAAAATGAAAACTGAATGACTACAGATGAATTTTAGACAATGAATTCAGGTTACGTTACTGTACATCTTGTTTTTAAAACCTAAATGCAGTGAAACCTTTGAATGACCCTAAAACAACATGGGACATGGATTGAATAATACAAATGTAGAATGAATTCAATTTAAATAATAAAGTCATACATTTTGGGGAGCAAATAAACACATGAGGACAGAGCATGGTTTACTTTTAAGGCTGAAAGGTAAATACACAAAGTAATCATTATATATTTgaaaatgccaacaacgaacatgAGTCTGAATTTGTTCTACAAAAAACCCTGAATTGAGAAGACATGGTAAAACGTCCACTGGGAACAATGCAGAAATCAAAAGTAGAATGATTAAATTAGATGATTTAAATTGCAGAAAAATCCTAATTGAACTACATGGTGATCTTGAAAACCAAAATGAGAATAATACTGGTTTGGAAGTTATGGCACTTCTGTTTCCTCCGTATCATGAAGTTAATTCATATCATTACAGGTCTAATACCACCAAGGTCACTGTCCTAGTAGTGATGATTAAAAAACAGAATTTcagttaaaacatgtttttttttttaggttgtcATAGGGTCATTAAAACCTGACAAAACACAATTTACTCCATATTGTTCAATGTCATATCCACATGTCAATTTCACAAACTTGAACCTCAATGCCAATACAAGAATGATAAAATCTAAATAATGATTGTCAAACCTTTCGTACCATTAGCAGAGAAATGGTTATGAAGTTTGgtgaaataataatataaatattcACATTCCATTGTTTAAATGTAATTACTCTTCCTGCTTTACGTCCCCTAAGTGAGGTCACAGCAGGTGAGCTACTACATAACCCCAATATTTACATTGAAGCACAAATGCTGTACAAACAAAACAGGGCAAATGAGAACATTTCAGTTTTCTATGCTAGTCAAAGTGCATTACAAATGCTTATAACAAAGGCATCATTACAGACTTGAAACACAGCTGTGTTGATATCACAGTTTCCAACAGATCAAGTAACTGTGTAGGGGACTCGGGAGGGCTACTAAAAGTTGCCTTTGAATAACAACATCAGCATTAGCAGACAACCCTCAGAGGCAAGTCAAAACACATTCATTTACTGAAAAACAAATCTTAACATTTGAATTCTTAATAGACACAATTTTCACTTCTATATTATTAAAGTTTACGGACAAGTGTTTAAGTTAAACATACTAAATAAGAGTAGATGCTGTTGCAAACAACAGACAGGGAGGTACATTTTTCTCTCCTTTCTGAAGAGCTTCCTGGATGGTCATTACATCGTGTTGCAGATTGTTGATTTAGATTGCACTGGTTGCTTTGTATATATATTCAGAAAGAGGAAATAAACAATGCAAAATCTTCAGCGCATGTTATGGACACCGCAAACATACAAAATATAAATTTGGTTAAGTGTCAGACACTCTTAAATGTACATTACTTGAAGGTCTCATCAGTTTCAAATGACAACTTCATTTTGAAACAATTTAGCAACTTTCATATGTGCCACAGTTTCAAATAATCCAAAAAAGAAAGTGTGATTAATCTGAATGTGAAAAATTAAGCCTGAGAATTACAAAGCAAAATAGCTAGTAATCAGTTGAGATAAACATAACCTAAGATACAGATGAACTGAAAATGTAGCTCAATGTGTTAAAAATAATACACCATCTAAAAACACACGGTCCCCGTTCTCACCCTATTCACATTGAGGCCTTGTGATTCAATATGGCACCACTATAGATAGTTTTATCCACTTCATATATATAAACTGTATTCTAGTCTAGGCCTATTTAACTATAGATAAGCCCTGAAATAAAGTAGTACCTTTTCCTGGTCTACAGAGCGGCTATTAGTAACAGCTGTGACACCTCATTGTATCACGTTGTACTACACTGGACCATTTGTTCAGTAGATATTCAgactggccttttactggactcAACATAGCCATGAAGGGAACAAGTGGTGGACAAAGTGGTCAAATATGCGGACTAGCTTTACCACAAAACTCTGTTAGATAAAAATCGAAATAACTCAAAATATATTCTCTCTGAAACTTGAACGATGATCACTTAAACATTCATCATCCATTCAGAGTTCTTTCAAGTATATGTTAAAACTTCTGAGACAACCAATACTGATTAATGCCAGTATGAATTTGAATTTAAAAGACCATAAACCGATGGCCAAGTATTTATCCCCTCTGGATTAAAATATCATTCATTTATGCAGTATAGTATAGAGTTGCAATACCAGAACAGCATAGAGCTCCAATACCAGAACAGCATAGAGCTCCAATACCAGAACAGCATAGAGCTGCAATACCAGAACAGCATAGAGCTCCAATACCAGAACAGCATAGAGCTGCAATACCAGAACAGCATAGAGCTCCAATACCAGAAAAGTATAGAGTTCAATACCAGAACAGTATAGAGTTCAATACCAGAACAGTATAGAGTTCAATACCAGAACAGTATAGAGTTCAATACCAGAACAGTATAGAGCTGCAATACCAGAACAGCATAGAGCTGCAATACCAGAACAGTATAGAGTTCAATACCAGAACAGTATAGAGTTCAATACCAGAACAGCATAGAGCTGCAATACCAGAACAGCATAGAGCTTCAATACCGGAACAGTATAGAGTTCAATACCAGAAAAGTATAGAGTTCAATACCAGAACAGCATAGAGCTGCAATACCAGAACAGCATAGATCTCAATACCATAACAGTATAGAGTTCAATACCAGAACAGCATAGAGCTGCAATACCAGAACAGCATAGAGCTCCAATACCAGAACAGCGTAGAGTTCCAATACCAGaacagtatagagttccaataccagaacagtatagagttctaataccagaacagtatagagttccaataccagaacagtatagagttccaatacCAGAACAGCGTAGAGTTCCAATACCAGAACAGTGTAGAGTTCTAATACCAGAACAGTGTAGAGTTCCAATACCAGaacagtatagagttccaataccagaacagtatagagttccaatacCAGAACAGTGTAGAGTTCCAATACCAGAACAGTGTAGAGTTCCAATTCCAGGACAGCGTAGAGTTCCCATACCAGAACAGCGTAGAGTTCCAATACCAGAACACTATAGAGTTCCAATACCAGAACAGTGTAGAGTTCTAATACCAGAACAGTATAGAGTTCTAATTCCAGAACACTATAGAGTTCCAATACCAGaacagtatagagttccaatacCAGAACACTATAGAGTTCCAATACCAGAACAGTATAGAGTTCTAATACCAGAACAGTGTAGAGTTCCAATTCCAGAACAGTATAGAGTTCCCATACCAGAACAGCATAGAGCGTCAATACCAGAACTCACATAAGGTTATGGTTAATAGGAGTAAGGTTGAAGGgacagggggatacctagtcagttgaggaTTAGCTGTGTTGTATGTCCAGAACCTACTACTCTACCGCATGAATTGTAACAGACTACTACTGACATGtctaagccagtggctcagagaTAATACGCTGCAGTGTCAGTGGAATGTAACTTGCCAACAAAAGTCTTAACAAACAGAGAGAACCTGCAAGAAAACTATAGTAGAAATAGGGTTTGAGGGTTCCTATTTTGAGCTAACGATTCTGTACCTGTGTGCAAGCTATATGTCGGCCAGTCATAtcaaagagaggaaggaaaccgtacATTCCTCCTAACAGTATATCAGAATCTGTTTTACACCATTGCATAGAAGCCTATCTCCTGTAGTGATTGGGCGCGTCAGCGAACATGTACTTGAGTCTGTACGCTTCAGCCAGGAGAAGGCCCACTTCCTCATTCCCCCAGTGGATTGTGGGAAGGTTCT

Function

NR:

description
PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1606013 True 4017 lncRNA 0.37 5 70389608 70394300

Neighbor

gene id symbol gene type direction distance location
LOC110492649 LOC106566409 coding downstream 107369 70229839 ~ 70282239 (-)
LOC110492660 LOC106566428 coding downstream 168056 70216538 ~ 70221552 (-)
LOC118939578 NA coding downstream 201750 70185375 ~ 70187858 (-)
LOC118936543 LOC106566425 coding downstream 256328 70127253 ~ 70133280 (-)
LOC110491172 LOC106566442 coding downstream 723591 69577674 ~ 69666017 (-)
tmed4 LOC106566412 coding upstream 28129 70422429 ~ 70426035 (-)
LOC118939579 NA coding upstream 63621 70455694 ~ 70552795 (-)
LOC110492786 LOC105023799 coding upstream 147250 70541550 ~ 70754162 (-)
trnat-agu-43 NA coding upstream 609051 71003351 ~ 71003424 (-)
trnah-gug-30 NA coding upstream 610071 71004371 ~ 71004442 (-)
G1405985 NA non-coding downstream 163604 70223162 ~ 70226004 (-)
G1405958 NA non-coding downstream 251871 70137387 ~ 70137737 (-)
G1405919 NA non-coding downstream 254508 70134770 ~ 70135100 (-)
G1405933 NA non-coding downstream 263314 70126051 ~ 70126294 (-)
G1405918 NA non-coding downstream 275727 70112899 ~ 70113881 (-)
G1406091 LOC106566414 non-coding upstream 57935 70452235 ~ 70453318 (-)
G1406097 NA non-coding upstream 59587 70453887 ~ 70456223 (-)
G1406099 NA non-coding upstream 67389 70461689 ~ 70462523 (-)
G1406100 NA non-coding upstream 69370 70463670 ~ 70466262 (-)
G1405917 NA other downstream 294067 70078657 ~ 70095541 (-)
G1405172 NA other downstream 871495 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 1109249 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 1182450 69203286 ~ 69207158 (-)
G1406228 NA other upstream 341347 70735647 ~ 70742179 (-)
G1406514 NA other upstream 866022 71260322 ~ 71260817 (-)
G1406752 NA other upstream 1108179 71501118 ~ 71547366 (-)
G1406760 NA other upstream 1145658 71539958 ~ 71543469 (-)
G1407628 NA other upstream 1937506 72331806 ~ 72332715 (-)

Expression


Co-expression Network