G1406100


Basic Information

Item Value
gene id G1406100
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70463670 ~ 70466262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1606046
GATTTGTTAACTCTACATGGCTGTAACATACAGAACAACTCTTTGGTacaggtatatatacacacacagacaattttatttttttgaaaatcTCTTATTTTGGATGGGGGGGCCTCTTATGAACATAATATTACTTAATGAAACCCACAAAACATGAGAAAACCAGTCTCTTATCCAATGAGAATGAATCAATGACAAGGTAGAACAATAACAGATTCTGTACAAACAAGGTGGTGTGGATTTTACTGATCCGAACAGCTAGACAGTCCTCTAAATGAATTTCCTGTGGAGAACTAGAAATCGTTCagtcagaaaagagagagagtggagtgcAACCTACACGTTTGTTCATGTTCGTTTGCCCCATGTGCAACTTCCTAATACAAAACAAAATGCCTTATGGGTGAAGGTGTAACACATTAGTACTCTTAGCCTTTATCAGAGGAAAAACCAAGTGGTATCAAGTTATATGACAGAGAAAAGTGGTGGAGAACACTAGTGACTACAGTTCCTTGATCGTGTTCTGCTCCAGGTCTTTTGCTGGGTTAGAACAAAGCAAGATGGTGTTGGAAATCACAAGTTATcttacactacataaccaaaagtatgtggacacctactcaacGAACATCTCATTCGGAaaccattaatatggagttgacgttgcttccggaggtagtttggaactcggtagtgagtgttgcaaccaaggagaTGATTTTaaacgtgcttcagcactcggtggtcccgttctgtgagtttgtgtggcctaccactttgcggctgagccgttgctgCTCCAAGACGTTTCCCACAACAGCAGCATTTACAGCTGATCGTGGcacctctagcagggcagaaatttgacaaaatgactttttggaaagatggcatactatgacagtgccacgttgaaagtcactgagctcttcagtaaggccattctactggcagtgtttgtctatggagattgcacggcggcatgctcgattttatacacctgtcagcatcgggtgtggctgaattagccaaatccactaattttgaaggggtgtccacatactttgtatatatagtgtacatcgGTGAGAAGTGTACAGAGCACAGAATTGTGGACCACCAAAATGATTGGTTTATATGGTCAGTGTTGTCTACTGGCTTCTTAAACATCAGTACAAAAGGAAAGAAAAAAGgagaaacaaatattttttttaaaagacaaAGAGTCCTTGATGATGACAATAAGAACAAAATGTAAGAATATAAACCAAAAATAAATAGCCATCTCTCAGATGATCCAATTGGAAAGTGATCTGTTGCAACAAGTCTCTTGCAAGAGGTTTAATTTGCATCCCAGTGGCCAGATGCCTCCACATCTAGGGATGTAATTCAGGGACGTGAAACGCTACTTTTACATTTGGAGTCATTTCGCACAGTATTTCCTAACTCCACAACAGTACACATTCTCAgataagcacacctgattcaactattcATCAGGTCCTCAGTGAGCTGTatcaggtgtgtttgtccaggTCTACAACAAAAGGCTGCTGTAGGGCTTTACTGGAGGACCGGAATTGAGCtttactggaggaccggagttgagctttactggaggaccggagttgagctttactggaggaccggagttgagctttactggaggaccggagttgggctttactggaggaccggagttgggctttactggaggaccggagttgggctttactggaggaccggagttgggctttactggaggaccggagttgggctttactggaggaccggagttgggctttactggaggaccggagttgggctttactggaggaccggagttgggctttactggaggaccggagttgggctttactggtggaccggagttgggctttactggaggaccggagttgggcattactggaggaccggagttgggctttactggaggaccggagttgggctttactggaggaccggagttgggcttactggaggaccggagttgggcttactggaggaccggagttgggcttactggaggaccggagttgggctttactggaggaccggagttgggcttacTGGAGGTTACATACTCCTGAACATAGCCCCAGGGTTTTACATTACAGTGGTTGGAAGGTTTCATCAGGGGCAAACCAGGCCGGGCCGCATTCAGCAGGGCAAAACGTTATGGAACGTTCGGATAGAACTCCTTAACGGAGAACAAACATGCCTCAATGACAAGTAGAAAAATGAGTTAAGTCAGCTCCAGTCATTCGAATTAGCTGCAACATTCAAAAACGTTTGTCGACTGAACAGGCCCTAGGTGTTTTGCATTGCAGTACTGGGGGGCCGTCACTGGGGGGCGATCCAGGGGTGGCGCAGGCAGTCTGCAGCCGTGGCTCTCTTCTCTGGTACCAGCTCCAGCATGGGGAGGAGGAAGTCAGCGAAACAATCAGCCTCCTCTTTGGACCACTCGTACTTATCCTGCAGCACCTCTAGTAACCCCCATGGCTTCAGCTTGGTGATGTGCTTC

Function

NR:

description
SRSF protein kinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1606046 True 2545 lncRNA 0.46 2 70463670 70466262

Neighbor

gene id symbol gene type direction distance location
LOC118939579 NA coding downstream 5111 70455694 ~ 70552795 (-)
tmed4 LOC106566412 coding downstream 37635 70422429 ~ 70426035 (-)
LOC110492649 LOC106566409 coding downstream 181431 70229839 ~ 70282239 (-)
LOC110492660 LOC106566428 coding downstream 242118 70216538 ~ 70221552 (-)
LOC118939578 NA coding downstream 275812 70185375 ~ 70187858 (-)
LOC110492786 LOC105023799 coding upstream 75288 70541550 ~ 70754162 (-)
trnat-agu-43 NA coding upstream 537089 71003351 ~ 71003424 (-)
trnah-gug-30 NA coding upstream 538109 71004371 ~ 71004442 (-)
trnat-agu-44 NA coding upstream 538465 71004727 ~ 71004800 (-)
trnah-gug-31 NA coding upstream 539485 71005747 ~ 71005818 (-)
G1406099 NA non-coding downstream 1147 70461689 ~ 70462523 (-)
G1406097 NA non-coding downstream 7447 70453887 ~ 70456223 (-)
G1406091 LOC106566414 non-coding downstream 10352 70452235 ~ 70453318 (-)
G1406075 NA non-coding downstream 69370 70389608 ~ 70394300 (-)
G1405985 NA non-coding downstream 237666 70223162 ~ 70226004 (-)
G1406172 NA non-coding upstream 163394 70629656 ~ 70630583 (-)
G1406238 NA non-coding upstream 288495 70754757 ~ 70754978 (-)
G1406244 NA non-coding upstream 291399 70757661 ~ 70757947 (-)
G1406274 NA non-coding upstream 318494 70784756 ~ 70785451 (-)
G1406282 NA non-coding upstream 325538 70791800 ~ 70792201 (-)
G1405917 NA other downstream 368129 70078657 ~ 70095541 (-)
G1405172 NA other downstream 945557 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 1183311 69277827 ~ 69280359 (-)
G1404974 LOC106566438 other downstream 1256512 69203286 ~ 69207158 (-)
G1406228 NA other upstream 269385 70735647 ~ 70742179 (-)
G1406514 NA other upstream 794060 71260322 ~ 71260817 (-)
G1406752 NA other upstream 1036217 71501118 ~ 71547366 (-)
G1406760 NA other upstream 1073696 71539958 ~ 71543469 (-)
G1407628 NA other upstream 1865544 72331806 ~ 72332715 (-)

Expression


Co-expression Network