XLOC_033053 (tomm6)


Basic Information

Item Value
gene id XLOC_033053
gene name tomm6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40572545 ~ 40573270 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064234
ACTAATGCGATAACCTCGTGGTTTGCCGTAGAAATTCCAAGGTAATATCAAAGACCTTCTGCTTGAATGCTTCGTGTGGCTAAtcctaataatttattataacgTTTAAAAACAATGAGCGGAAAGAAATCGGAAGGGAAATCGGGAGGGGTCACGGGATGGATAAGCTCGGCTTGCCGTTTTGCCGCAGACCGAAATGATTTTAGAAGGAATCTCCTTGTGAACCTGGGCTTGTTTGCTGCGGGTGTTTGGGTCGCGAGAAACCTTTCAGATTTTGACTTGATGTCTCCTCAGCCGGTCACGTAGCTCCACACATTAACAACAAAATGGACTCTTACAGGTGGTGCTGAAATGGGAGAAGAAAGACGTTTTCTACAGTGGGTCTTGTTGAACAAGCCTATTCAACAGCGAAGGGAATAAATCCCAACAATTGGATGATTACAAATTGTAAATTTCTTCTGTATATGCATTGTGTTTTGTTGAAATAAACCTCATGTTAAAACGTT
>TCONS_00064235
CACTACGGGTTGTCCCCGTCGAGCACCCGTACTAATGCGATAACCTCGTGGTTTGCCGTAGAAATTCCAAGGAATCTCCTTGTGAACCTGGGCTTGTTTGCTGCGGGTGTTTGGGTCGCGAGAAACCTTTCAGATTTTGACTTGATGTCTCCTCAGCCGGTCACGTAGCTCCACACATTAACAACAAAATGGACTCTTACAGGTGGTGCTGAAATGGGAGAAGAAAGACGTTTTCTACAGTGGGTCTTGTTGAACAAGCCTATTCAACAGCGAAGGGAATAAATCCCAACAATTGGATGATTACAAATTGTAAATTTCTTCTGTATATGCATTGTGTTTTGTTGAAATAAACCTCATGTTAAAACGT
>TCONS_00064236
GATAACCTCGTGGTTTGCCGTAGAAATTCCAAGGTAATATCAAAGACCTTCTGCTTGAATGCTTCGTGTGGCTAAtcctaataatttattataacgTTTAAAAACAATGAGCGGAAAGAAATCGGAAGGGAAATCGGGAGGGGTCACGGGATGGATAAGCTCGGCTTGCCGTTTTGCCGCAGACCGAAATGATTTTAGAAGGAATCTCCTTGTGAACCTGGGCTTGTTTGCTGCGGGTGTTTGGGTCGCGAGAAACCTTTCAGATTTTGACTTGATGTCTCCTCAGCCGGTCACGTAGCTCCACACATTAACAACAAAATGGACTCTTACAGGTGAAATGGCATAATGTTGTTGAAATCATCGTTCACCTCTCATCATGACTTAACTTGGGTTTCTTCTTCTTCAACACAGGTGGTGCTGAAATGGGAGAAGAAAGACGTTTTCTAC
>TCONS_00064237
GGTTTGCCGTAGAAATTCCAAGGTAATATCAAAGACCTTCTGCTTGAATGCTTCGTGTGGCTAAtcctaataatttattataacgTTTAAAAACAATGAGCGGAAAGAAATCGGAAGGGAAATCGGGAGGGGTCACGGGATGGATAAGCTCGGCTTGCCGTTTTGCCGCAGACCGAAATGATTTTAGAAGTGTCTGCTGTTGTTACAGGAATCTCCTTGTG

Function

symbol description
tomm6 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Orthologous to human TOMM6 (translocase of outer mitochondrial membrane 6).

GO:

id name namespace
GO:0005742 mitochondrial outer membrane translocase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-445 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Orthologous to human TOMM6 (translocase of outer mitochondrial membrane 6).

Ensembl:

ensembl_id ENSDARG00000097797

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064234 False 506 mRNA 0.42 3 40572545 40573240
TCONS_00064235 False 367 processed_transcript 0.44 3 40572546 40573270
TCONS_00064236 False 447 lncRNA 0.44 2 40572675 40573232
TCONS_00064237 True 221 mRNA 0.43 2 40572908 40573221

Neighbor

gene id symbol gene type direction distance location
XLOC_033052 NA coding downstream 90347 40477430 ~ 40482198 (-)
XLOC_033051 crbn coding downstream 105684 40456798 ~ 40466861 (-)
XLOC_033050 vhl coding downstream 117436 40451270 ~ 40455109 (-)
XLOC_033049 tatdn2 coding downstream 123146 40439858 ~ 40449399 (-)
XLOC_033048 ccdc174 coding downstream 137520 40429773 ~ 40435025 (-)
XLOC_033054 tspo coding upstream 4949 40578219 ~ 40583253 (-)
XLOC_033055 CU855953.1 coding upstream 52034 40625304 ~ 40625420 (-)
XLOC_033056 NA coding upstream 52361 40625631 ~ 40629161 (-)
XLOC_033057 ppil1 coding upstream 74518 40647788 ~ 40659100 (-)
XLOC_033058 dre-mir-429b coding upstream 79859 40653129 ~ 40653238 (-)
XLOC_033046 NA non-coding downstream 163420 40383424 ~ 40409125 (-)
XLOC_033043 NA non-coding downstream 390025 40173228 ~ 40182520 (-)
XLOC_033038 NA non-coding downstream 528434 40038692 ~ 40044111 (-)
XLOC_033025 CU467856.1 non-coding downstream 1047040 39524924 ~ 39525505 (-)
XLOC_033059 dre-mir-141 non-coding upstream 82733 40656003 ~ 40656085 (-)
XLOC_033060 dre-mir-200c non-coding upstream 82934 40656204 ~ 40656288 (-)

Expression


Co-expression Network