G1406453


Basic Information

Item Value
gene id G1406453
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71169680 ~ 71170260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1606444
AATCGATATCCTATTTAAGGTTATCGTTGAGATATTCATTTGAAGCCCAGCTAGTGTTGTGATCGGTAAATGTGCCCTGAGCCTCTTTCTCTATACTCCCCAGTCTATTTACACCCCCAGCTAATCTGCATGTCTCTGCCTTCCTCCCAAGCCTTACATAAGGCCTTTAACATTTGAAAAAGCACATCATGGCTTTGTGCtttatacacagacacacacactggcacacacacacacacacacacacacacacacacacacacacacacacacacacacactggcacacactggcacacactggcacacacacacacactggcacacacacacactggcacacacacactggcacacacacacactggcacacacacacacacactggcacacacacactggcacacacacacacacacacactggcacacacacacacacactggcacacacacacacacactggcacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1606444 True 481 lncRNA 0.49 2 71169680 71170260

Neighbor

gene id symbol gene type direction distance location
trnan-auu-2 NA coding upstream 171893 70997717 ~ 70997787 (+)
trnan-auu NA coding upstream 176217 70993393 ~ 70993463 (+)
trnat-agu-42 NA coding upstream 177293 70992314 ~ 70992387 (+)
trnat-agu-41 NA coding upstream 178355 70991252 ~ 70991325 (+)
trnat-agu-40 NA coding upstream 179417 70990190 ~ 70990263 (+)
LOC118939583 NA coding downstream 27007 71196255 ~ 71198225 (+)
LOC110491184 LOC106572946 coding downstream 116286 71286546 ~ 71362472 (+)
LOC110491185 LOC106566323 coding downstream 211095 71381355 ~ 71412264 (+)
LOC110517572 LOC106572960 coding downstream 248516 71418776 ~ 71500706 (+)
trnat-agu-71 NA coding downstream 379246 71549506 ~ 71549579 (+)
G1406447 NA non-coding upstream 16458 71152449 ~ 71153222 (+)
G1406411 NA non-coding upstream 77507 71091905 ~ 71092173 (+)
trnat-agu-21 NA non-coding upstream 231308 70938109 ~ 70938372 (+)
trnat-cgu-7 NA non-coding upstream 233782 70907337 ~ 70935898 (+)
G1406366 NA non-coding upstream 263954 70905291 ~ 70905726 (+)
G1406459 NA non-coding downstream 14282 71184542 ~ 71185729 (+)
LOC118939582 LOC106566316 non-coding downstream 21264 71103181 ~ 71193739 (+)
G1406426 NA non-coding downstream 31259 71201519 ~ 71202356 (+)
G1406501 NA non-coding downstream 36180 71206440 ~ 71206664 (+)
G1406381 NA other upstream 197076 70969615 ~ 70972604 (+)
G1405676 NA other upstream 912250 70256822 ~ 70257430 (+)
G1405605 LOC106566425 other upstream 1037379 70129921 ~ 70132301 (+)
G1405310 LOC106566443 other upstream 1497006 69671464 ~ 69672674 (+)
G1405218 NA other upstream 1582774 69585989 ~ 69586906 (+)
G1406424 NA other downstream 32182 71202442 ~ 71206092 (+)
G1406505 NA other downstream 40012 71210272 ~ 71210764 (+)
G1406507 NA other downstream 44117 71214377 ~ 71216430 (+)
G1406508 NA other downstream 75313 71245573 ~ 71246023 (+)
G1406509 NA other downstream 80814 71251074 ~ 71251644 (+)

Expression


Co-expression Network