XLOC_033054 (tspo)


Basic Information

Item Value
gene id XLOC_033054
gene name tspo
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40578219 ~ 40583253 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064238
ATTGTTTCTACAGCAGCACAGAGCTACACGCCCACTGGCTGTTACACAAACTTATATCAGGATTTCAAGATCACTCCGGTCATAGAAGGCTGTCCAAACCGGTCTCTTCTTCACATCGAGCAGCTTCACGACTCTCCAGTTGAGGATGTGGATTCCTATGCTGAGCCTGACTGCCCTCCCTCACGTTGGTGGGATATTTGGAGGTATAATCACACGGCGGGAGGTTAAGACCTGGTACTCCACGCTCAATAAACCCTCATGGAGACCACCGAATGCTGCCTTCCCAGTGGTGTGGACCACCCTTTACACTGGCATGGGGTACGGCTCATACCTTGTGTGGAAAGAGCTTGGAGGCTTCACCCAGGATGCAATGGTGCCATTGGGGCTTTATGGGCTGCAGTTGGCACTTAACTGGGCCTGGACCCCCATCTTCTTCGGTGCACACAAAATTCAACTGGCACTGATAGAGCTATTGTTGATGAGTGGCACAGTGGCAGCCACAATGGTGTCCTGGTATCCCATCAGCCGCACTGCAACACTTCTCATGGTGCCATACATGGCCTGGTTGTGTGTCGCCACCAGCCTCAACTACTGTATTTGGAGAGACAACCCAGAGCCCAAGAAAGAAGACTGAAGAGCCCAACACTATTCCAGCTAACACAACTAAGAAGAATAAATGCACTCATGATTGTTTTGTTACTTGTTGGCATTTctgaaaatgtttaattaagagtttgaattttttttatattcacttGCAAGGTAATTCACCGGATGTCTTAAGTAGAAGAGGTGACGCAATAAAATAATACTCTAATGCTtccataaattattttttaacacactgCACCTATTTACTCATGTTTAGATCAGTTTATTTGCTCTTCAAATCAACTGTTTGCTAACTTccttaaataaacatgtttaaagCACA
>TCONS_00064239
ATGTGGATTCCTATGCTGAGCCTGACTGCCCTCCCTCACGTTGGTGGGATATTTGGAGGTATAATCACACGGCGGGAGGTTAAGACCTGGTACTCCACGCTCAATAAACCCTCATGGAGACCACCGAATGCTGCCTTCCCAGTGGTGTGGACCACCCTTTACACTGGCATGGGGTACGGCTCATACCTTGTGTGGAAAGAGCTTGGAGGCTTCACCCAGGATGCAATGGTGCCATTGGGGCTTTATGGGCTGCAGTTGGCACTTAACTGGGCCTGGACCCCCATCTTCTTCGGTGCACACAAAATTCAACTGGCACTGATAGAGCTATTGTTGATGAGTGGCACAGTGGCAGCCACAATGGTGTCCTGGTATCCCATCAGCCGCACTGCAACACTTCTCATGGTGCCATACATGGCCTGGTTGTGTGTCGCCACCAGCCTCAACTACTGTATTTGGAGAGACAACCCAGAGCCCAAGAAAGAAGACTGAAGAGCCCAACACTATTCCAGCT

Function

symbol description
tspo Acts upstream of or within primitive erythrocyte differentiation. Predicted to be located in membrane. Predicted to be active in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial blood vessel; blastomere; hematopoietic system; nervous system; and pleuroperitoneal region. Orthologous to several human genes including TSPO (translocator protein).

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04214 Apoptosis - fly
ko04979 Cholesterol metabolism
ko05166 Human T-cell leukemia virus 1 infection
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041010-125 Acts upstream of or within primitive erythrocyte differentiation. Predicted to be located in membrane. Predicted to be active in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial blood vessel; blastomere; hematopoietic system; nervous system; and pleuroperitoneal region. Orthologous to several human genes including TSPO (translocator protein).

Ensembl:

ensembl_id ENSDARG00000026655

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064238 False 934 mRNA 0.45 4 40578219 40583253
TCONS_00064239 True 511 mRNA 0.53 3 40578497 40581376

Neighbor

gene id symbol gene type direction distance location
XLOC_033053 tomm6 coding downstream 4949 40572545 ~ 40573270 (-)
XLOC_033052 NA coding downstream 96021 40477430 ~ 40482198 (-)
XLOC_033051 crbn coding downstream 111358 40456798 ~ 40466861 (-)
XLOC_033050 vhl coding downstream 123110 40451270 ~ 40455109 (-)
XLOC_033049 tatdn2 coding downstream 128820 40439858 ~ 40449399 (-)
XLOC_033055 CU855953.1 coding upstream 42051 40625304 ~ 40625420 (-)
XLOC_033056 NA coding upstream 42378 40625631 ~ 40629161 (-)
XLOC_033057 ppil1 coding upstream 64535 40647788 ~ 40659100 (-)
XLOC_033058 dre-mir-429b coding upstream 69876 40653129 ~ 40653238 (-)
XLOC_033059 dre-mir-141 coding upstream 72750 40656003 ~ 40656085 (-)
XLOC_033046 NA non-coding downstream 169094 40383424 ~ 40409125 (-)
XLOC_033043 NA non-coding downstream 395699 40173228 ~ 40182520 (-)
XLOC_033038 NA non-coding downstream 534108 40038692 ~ 40044111 (-)
XLOC_033025 CU467856.1 non-coding downstream 1052714 39524924 ~ 39525505 (-)
XLOC_033060 dre-mir-200c non-coding upstream 72951 40656204 ~ 40656288 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09702982_09703952 TSPO coding CI01000340 null 9702969 ~ 9704760 (-)