G1406500


Basic Information

Item Value
gene id G1406500
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71199077 ~ 71202338 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1606499
ctctaaccactaggctacctgcctcctctacactctaaccactaggctacctgccgcccctacactctaaccactaggctacctgcctcctctacactctaaccactaggctacctgccgcctctacactctaaccactaggctacctaagaTTGATAAGATTGAATCTCTTATAACAAGTGAATGAATTAAACAAGTGTGTAAAAACATGCAGCAGATTGAGAGTATTGAGAGTATTGTAAAGGTGTCGTTAACCACACCAGTGTGGGTCGTCTTAAATGCAGCATGTTGACAGGATCTAGTTAATCCTATGACAGCACAGCCCCACTACAGCGCTAGATAgacaacgtctctctctctctctctcacgtcaaCACAGCCCCACTACAGCGCTAGATAGACAACGTCTCTCTCACGTCAACACAGCCCCACTACAGCGCTAGATAgacaacgtctctctcacgtcaaCACAGCCCCactacatatttttttatatatgcCCTTCACATCACATTCATCCCCTTGGTAACAGAAGAATGATGCAATGGTTACCATAACATACGTAAAGCAGGCAAGACTATATTTACGTTGTTCTCTAATTCTCTGAAAAATAATAAATCAGTTGGACTACATATTTAATAATTGTCTGGTTCTCGTATCGATCGGGTCCCCACCTTAATGTTTAAAAACATACAGATGAGCTAGTTAAAGAGCTCAGATATAAAGTGGgcttctttaaaaaaagaaaaagatcTTGCCTCAGGAAGCAGATTGTACAGTCAACTTTCCTGCCAGTTCTTGGCTATGGTGACACCATTTACCAGAATGCATCAGCCACTACTCTTAACCCTTTGGATGCCGTCTACCATCACGCCTGTCGCTTTATCACAGGGGACAGTTTTAATACTCACTACTGCATCCTGCTGGTCCTCATTCAAGCCCAGAAGATCACCTCATTACTCCCCTTTATTTACAAAGCACTACTACACAAGCTTCTGACGTAACCGAACGTTGCTGTTAAAATCTTTCAAAAACGCGAAAGCAAACCCGTTCACAAGGTTGCTTAACATTTGGAGGTTCCTGGGGTCTCCATCAAACGTTGTAGTTTTAAAGCACCTCGTTGCTAGAACCAActacacactacattacacttGGATGTTCTGGCACCTTCTTATTGAggaattgtattgtgttgtgctgTAATTGCCtggttttatattgtattatatatatttttttatattttctatgaaATTGTAGATGCAGGGCTTGTGAAAGAGACCATGTTGATTACCTACTTAAATAAAAGTACAATATAATGACAAGTCAATAGAGTACACAGCACTCATGTTCCTCTGTAGCAGGAGCTCCAGTCCTCAGAGCCTGATTGGTGACACACTCCAGCCCCAGCTAACATACCTGACTgtaataatcaactaatcatgggCTTCAGTTTGGAATGCaaattagtttaatcaggtgttctggggcaaaagtgtgacaccaatcaggcctccgAGGACGAGAGTGGTCCACACCTAATCTACATTCTCCAGGGGACCAGTAAGACCAAGTATAGGGGACCAGCCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGCCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGCCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGCCAGTTGCCAAGCTGCGTGTGACTTTGAATAAGTAAGTTCTCCGTTCATTGCACTTGCAAGAAGTCCACATCCAGGGACTGATCATGAAATGAAGAGCAAACAAGACAACACATTGACTATAGACTAACTACTACTATAGTGTGTAACACTACAACGCTTTACCAAAGAACTGAAGAACTTAACAGGAAGCTATAGAGTGTGTGTCCCAATTAACACCTTACCTCCTTATAAACCCTTAGAAATAAAGGGGCatggaagaaccttttggggggTGCCACACCGGAAGAATCTTTCCCATTGTTAAAAAGGTTCCTTAAGGAATCCCTCTTAAAAGGAACCCCTGGAGGAACCCCTGGAGGAACCCCTGTGCAAAGGTTCAAACCTGAAACTTTTTGTGATGGGAGTGGTTCAATTTTGAACCTTTTTGATAATATCTTGTCAGTTTATCAGATTGTAGGCGTGGCTTATTGTAGGCGTGGCTTATTGTAGGCGTGGCTTTCAGATAATTAATTTTGGTCACCCCTAAacgtaaatgtcattcctgttcatcatgttaagTTTGTAAACTGCCTTTTTGTTATACTCCTT
>TU1606500
ctctaaccactaggctacctgcctcctctacactctaaccactaggctacctgccgcccctacactctaaccactaggctacctgcctcctctacactctaaccactaggctacctgccgcctctacactctaaccactaggctacctaagaTTGATAAGATTGAATCTCTTATAACAAGTGAATGAATTAAACAAGTGTGTAAAAACATGCAGCAGATTGAGAGTATTGAGAGTATTGTAAAGGTGTCGTTAACCACACCAGTGTGGGTCGTCTTAAATGCAGCATGTTGACAGGATCTAGTTAATCCTATGACAGCACAGCCCCACTACAGCGCTAGATAgacaacgtctctctctctctctctcacgtcaaCACAGCCCCACTACAGCGCTAGATAGACAACGTCTCTCTCACGTCAACACAGCCCCACTACAGCGCTAGATAgacaaacgtctctctctctctctctcacgtcaaCACAGCCCCACTACAGCGCTAGATAgacaacgtctctctctctcacgtcaaCACAGCCCCactacatatttttttatatatgcCCTTCACATCACATTCATCCCCTTGGTAACAGAAGAATGATGCAATGGTTACCATAACATACGTAAAGCAGGCAAGACTATATTTACGTTGTTCTCTAATTCTCTGAAAAATAATAAATCAGTTGGACTACATATTTAATAATTGTCTGGTTCTCGTATCGATCGGGTCCCCACCTTAATGTTTAAAAACATACAGATGAGCTAGTTAAAGAGCTCAGATATAAAGTGGgcttctttaaaaaaagaaaaagatcTTGCCTCAGGAAGCAGATTGTACAGTCAACTTTCCTGCCAGTTCTTGGCTATGGTGACACCATTTACCAGAATGCATCAGCCACTACTCTTAACCCTTTGGATGCCGTCTACCATCACGCCTGTCGCTTTATCACAGGGGACAGTTTTAATACTCACTACTGCATCCTGCTGGTCCTCATTCAAGCCCAGAAGATCACCTCATTACTCCCCTTTATTTACAAAGCACTACTACACAAGCTTCTGACGTAACCGAACGTTGCTGTTAAAATCTTTCAAAAACGCGAAAGCAAACCCGTTCACAAGGTTGCTTAACATTTGGAGGTTCCTGGGGTCTCCATCAAACGTTGTAGTTTTAAAGCACCTCGTTGCTAGAACCAActacacactacattacacttGGATGTTCTGGCACCTTCTTATTGAggaattgtattgtgttgtgctgTAATTGCCtggttttatattgtattatatatatttttttatattttctatgaaATTGTAGATGCAGGGCTTGTGAAAGAGACCATGTTGATTACCTACTTAAATAAAAGTACAATATAATGACAAGTCAATAGAGTACACAGCACTCATGTTCCTCTGTAGCAGGAGCTCCAGTCCTCAGAGCCTGATTGGTGACACACTCCAGCCCCAGCTAACATACCTGACTgtaataatcaactaatcatgggCTTCAGTTTGGAATGCaaattagtttaatcaggtgttctggggcaaaagtgtgacaccaatcaggcctccgAGGACGAGAGTGGTCCACACCTAATCTACATTCTCCAGGGGACCAGTAAGACCAAGTATAGGGGACCAGCCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGCCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGCCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGTCAGACCAGGTATAGGGGACCAGCCAGTTGCCAAGCTGCGTGTGACTTTGAATAAGTAAGTTCTCCGTTCATTGCACTTGCAAGAAGTCCACATCCAGGGACTGATCATGAAATGAAGAGCAAACAAGACAACACATTGACTATAGACTAACTACTACTATAGTGTGTAACACTACAACGCTTTACCAAAGAACTGAAGAACTTAACAGGAAGCTATAGAGTGTGTGTCCCAATTAACACCTTACCTCCTTATAAACCCTTAGAAATAAAGGGGCatggaagaaccttttggggggTGCCACACCGGAAGAATCTTTCCCATTGTTAAAAAGGTTCCTTAAGGAATCCCTCTTAAAAGGAACCCCTGGAGGAACCCCTGGAGGAACCCCTGTGCAAAGGTTCAAACCTGAAACTTTTTGTGATGGGAGTGGTTCAATTTTGAACCTTTTTGATAATATCTTGTCAGTTTATCAGATTGTAGGCGTGGCTTATTGTAGGCGTGGCTTATTGTAGGCGTGGCTTTCAGATAATTAATTTTGGTCACCCCTAAacgtaaatgtcattcctgttcatcatgttaagTTTGTAAACTGCCTTTTTGTTATACTCCTT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1606499 False 2406 lncRNA 0.44 6 71199077 71202338
TU1606500 True 2468 lncRNA 0.44 6 71199077 71202338

Neighbor

gene id symbol gene type direction distance location
trnah-gug-49 NA coding downstream 153476 71045530 ~ 71045601 (-)
trnat-agu-70 NA coding downstream 154493 71044511 ~ 71044584 (-)
trnat-agu-69 NA coding downstream 155869 71043135 ~ 71043208 (-)
trnat-agu-68 NA coding downstream 157245 71041759 ~ 71041832 (-)
trnat-agu-67 NA coding downstream 158606 71040398 ~ 71040471 (-)
LOC110492672 LOC106566404 coding upstream 539638 71741976 ~ 71764421 (-)
LOC118939604 NA coding upstream 603932 71806270 ~ 71806324 (-)
LOC118939585 NA coding upstream 640809 71843147 ~ 71850380 (-)
LOC110492674 rbm15 coding upstream 650519 71852857 ~ 71858795 (-)
alx3 LOC106566393 coding upstream 664012 71866350 ~ 71881855 (-)
G1406493 NA non-coding downstream 3981 71193862 ~ 71195096 (-)
G1406482 NA non-coding downstream 41372 71157330 ~ 71157705 (-)
G1406421 NA non-coding downstream 99505 71099245 ~ 71099572 (-)
G1406419 NA non-coding downstream 100827 71097999 ~ 71098250 (-)
G1406416 NA non-coding downstream 103725 71094979 ~ 71095352 (-)
G1406504 NA non-coding upstream 7221 71209559 ~ 71209894 (-)
G1406506 NA non-coding upstream 7911 71210249 ~ 71210761 (-)
G1406511 NA non-coding upstream 53626 71255964 ~ 71256183 (-)
G1406519 NA non-coding upstream 61188 71263526 ~ 71263750 (-)
G1406527 NA non-coding upstream 69987 71272325 ~ 71272537 (-)
G1406228 NA other downstream 456898 70735647 ~ 70742179 (-)
LOC110492660 LOC106566428 other downstream 977821 70216538 ~ 70221552 (-)
G1405917 NA other downstream 1103536 70078657 ~ 70095541 (-)
G1405172 NA other downstream 1680964 69517755 ~ 69518113 (-)
G1405016 nsfl1c other downstream 1918718 69277827 ~ 69280359 (-)
G1406514 NA other upstream 57984 71260322 ~ 71260817 (-)
G1406752 NA other upstream 300141 71501118 ~ 71547366 (-)
G1406760 NA other upstream 337620 71539958 ~ 71543469 (-)
G1407628 NA other upstream 1129468 72331806 ~ 72332715 (-)
G1407755 NA other upstream 1233091 72435429 ~ 72437847 (-)

Expression


Co-expression Network