XLOC_033056


Basic Information

Item Value
gene id XLOC_033056
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40625631 ~ 40629161 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065209
GGAGTCTGTGTCTTTCAGCCGTTTTGTAGCAGTTGAAAAAATGCTGTCAGTCATGCTCTGACCTGATGTGCAACTCTTCCACTAGCCTTCATTGTAATGATAGAGTTGCAGCTTTCTTTTAAAGCTCCTTTGTTTGGAGTGGGGAGATCTGACTGACCAGGTGGATGAGCAAACAACATCGCCTGTCATCAAAGGAGGGCTCATGGAGATTGAAGAAATATTGGTTATTCTTGTCCCTACTGGTCCTGTCCAGCTCTCCATCTCCTTCACCACTGAATCTCCACTAGTCCCACTTAGCTCAACATCTCCTTTGTCCTCTGAATGTACACTTGTCCCAGCACGCTCTCCATCTCAAATTGTCCCCTTAGTCGCCTTCATCAGTCAGCTcgtgtattttaatatatttaaaattgtggAACATTCCAGCAAGTCGGGCACGCAGGAGAGCTGTGgtagaatgctggtgtagttgtagttaaattaaaactgattcagttcagttttgtatATATGTCGCTATTGAAGTtaatttcagtttaattcagGTTAGTCAGGTTAGTAGTTCCTTCTGACTCCGTTAGGCTCCTTCCTCCTTACATCACCTTGGTCCTGACTTGCTCTGGCTCCACCGAGGTCTTCCGGATCCCTGAACTGAGCTGCGTGAGTTATCATCGTTGACTAGGCCCTCCACCACCACTGGCTTCATCTCTGTCAGTTTGGCCCGCTGGAGAGTCtacagctgcgtcccaaatcgcatacttatcgCATACTTATCGCTTAATCGCatacgcacatgttggataactttatttttgatggtgaaagcaaaaaTCTCTTACgaaagtgattatagcgccttctGATGGTGAATGCGCTTATACTCACCGCaggtattatttaattattcggtcgtttatttcactgatttggcaaccgtcaaacgtcatcggagaaacggtttgaatttccacttagtaaaaaaacattagtgtgccatttgggacgacactacatacatatactatcctgttgagtgtgtaagtgcataagtacatagtgcatgagtgcatagtgtatagtgtgccatttgggacgcagcttaccACATTTCCAATATGGCTCCTTCCTCCCTCGAATCCACAGTGGGCTGTCACCTTGGCTGCTCTCTGGTCCCTGCCTGACTACTTCCTTCTAAAAGAAACATAATTCCATGTTTGTATTGAAGATATAAAGATATCACTGTGATCAAgtagtttagttttagtctttGTCCCATGACAATAGGCagcaaattaaatgttttagaCGGTTTAAAAAGGCCTTAGACTTTCTATCACATAATAAAAAAGATATACAGCAATCTACAGGCTCCTGCTTGTTCCGTAAACATTTGAGAAAAGGAGACACATCACCGAGAGCTGTTATCAATTGTTTTTGCTCACTAACAAAAGATGCAGAAGGCCTAAAGTGGTTGTGAGGCTTCCTGCTTTTTGGTTGAAATGTTGGTGGCTGAATGTTTGGATCCAACTAAAACAGATTCTTCCATTTTCTCAATGGGGGGTCCTGAAGAAATAGACAACACGTCTGGTGACGAGGCTCTCGTGTTACAGGATTCTGAAGTATGTTGTTCTGGCTTCCATGACTGTTTTACTGGAGATTGTCCTTGAGAGTTTAAGTTTTTCTAATACTTCACTGTCTATCTGTGACGAGCTCTGTGGGCAGGGCACAGCCGGCATTGTGTCCATGAGCAGTGGTTGTTGTGACTGCATGGTGTTATCATTGTCCTTGTGGGATGTTAACCACATGTCCATTCATGAAGTCCTATGGTCATTCAGAAACTCACCATCTGCGCATGCCAAGTCAAAAGTGGCACACACAGCAGTTGGATAAGGGAGGAAGAAGCATATTGACCTTTAGCACTTTTACATTTCAACAAACAGGAAATGAATATTAAAGAAGTTATATTTAAGACAAAACATTGTGTTCTTTTTGTATTTCACCACTGAAAATATTTCCAAAGGAAATCTTAGCAGAA
>TCONS_00065210
GTGGAGGAGCCTGCCATGCTCACAATGTGTACGCTTGCAGGAGTCTGTGTCTTTCAGCCGTTTTGTAGCTCCTTTGTTTGGAGTGGGGAGATCTGACTGACCAGGTGGATGAGCAAACAACATCGCCTGTCATCAAAGGAGGGCTCATGGAGATTGAAGAAATATTGGTTATTCTTGTCCCTACTGGTCCTGTCCAGCTCTCCATCTCCTTCACCACTGAATCTCCACTAGTCCCACTTAGCTCAACATCTCCTTTGTCCTCTGAATGTACACTTGTCCCAGCACGCTCTCCATCTCAAATTGTCCCCTTAGTCGCCTTCATCAGTCAGCTcgtgtattttaatatatttaaaattgtggAACATTCCAGCAAGTCGGGCACGCAGGAGAGCTGTGgtagaatgctggtgtagttgtagttaaattaaaactgattcagttcagttttgtatATATGTCGCTATTGAAGTtaatttcagtttaattcagGTTAGTCAGGTTAGTAGTTCCTTCTGACTCCGTTAGGCTCCTTCCTCCTTACATCACCTTGGTCCTGACTTGCTCTGGCTCCACCGAGGTCTTCCGGATCCCTGAACTGAGCTGCGTGAGTTATCATCGTTGACTAGGCCCTCCACCACCACTGGCTTCATCTCTGTCAGTTTGGCCCGCTGGAGAGTCtacagctgcgtcccaaatcgcatacttatcgCATACTTATCGCTTAATCGCatacgcacatgttggataactttatttttgatggtgaaagcaaaaaTCTCTTACgaaagtgattatagcgccttctGATGGTGAATGCGCTTATACTCACCGCaggtattatttaattattcggtcgtttatttcactgatttggcaaccgtcaaacgtcatcggagaaacggtttgaatttccacttagtaaaaaaacattagtgtgccatttgggacgacactacatacatatactatcctgttgagtgtgtaagtgcataagtacatagtgcatgagtgcatagtgtatagtgtgccatttgggacgcagcttaccACATTTCCAATATGGCTCCTTCCTCCCTCGAATCCACAGTGGGCTGTCACCTTGGCTGCTCTCTGGTCCCTGCCTGACTACTTCCTTCTAAAAGAAACATAATTCCATGTTTGTATTGAAGATATAAAGATATCACTGTGATCAAgtagtttagttttagtctttGTCCCATGACAATAGGCagcaaattaaatgttttagaCGGTTTAAAAAGGCCTTAGACTTTCTATCACATAATAAAAAAGATATACAGCAATCTACAGGCTCCTGCTTGTTCCGTAAACATTTGAGAAAAGGAGACACATCACCGAGAGCTGTTATCAATTGTTTTTGCTCACTAACAAAAGATGCAGAAGGCCTAAAGTGGTTGTGAGGCTTCCTGCTTTTTGGTTGAAATGTTGGTGGCTGAATGTTTGGATCCAACTAAAACAGATTCTTCCATTTTCTCAATGGGGGGTCCTGAAGAAATAGACAACACGTCTGGTGACGAGGCTCTCGTGTTACAGGATTCTGAAGTATGTTGTTCTGGCTTCCATGACTGTTTTACTGGAGATTGTCCTTGAGAGTTTAAGTTTTTCTAATACTTCACTGTCTATCTGTGACGAGCTCTGTGGGCAGGGCACAGCCGGCATTGTGTCCATGAGCAGTGGTTGTTGTGACTGCATGGTGTTATCATTGTCCTTGTGGGATGTTAACCACATGTCCATTCATGAAGTCCTATGGTCATTCAGAAACTCACCATCTGCGCATGCCAAGTCAAAAGTGGCACACACAGCAGTTGGATAAGGGAGGAAGAAGCATATTGACCTTTAGCACTTTTACATTTCAACAAACAGGAAATGAATATTAAAGAAGTTATATTTAAGACAAAACATTGTGTTCTTTTTGTATTTCACCACTGAAAATATTTCCAAAGGAAATCTTAGCAGAA

Function

GO:

id name namespace
GO:0003146 heart jogging biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065209 False 2035 lncRNA 0.42 3 40625631 40629122
TCONS_00065210 True 1979 lncRNA 0.43 2 40625631 40629161

Neighbor

gene id symbol gene type direction distance location
XLOC_033055 CU855953.1 coding downstream 211 40625304 ~ 40625420 (-)
XLOC_033054 tspo coding downstream 42378 40578219 ~ 40583253 (-)
XLOC_033053 tomm6 coding downstream 52361 40572545 ~ 40573270 (-)
XLOC_033052 NA coding downstream 143433 40477430 ~ 40482198 (-)
XLOC_033051 crbn coding downstream 158770 40456798 ~ 40466861 (-)
XLOC_033057 ppil1 coding upstream 18627 40647788 ~ 40659100 (-)
XLOC_033058 dre-mir-429b coding upstream 23968 40653129 ~ 40653238 (-)
XLOC_033059 dre-mir-141 coding upstream 26842 40656003 ~ 40656085 (-)
XLOC_033060 dre-mir-200c coding upstream 27043 40656204 ~ 40656288 (-)
XLOC_033061 NA coding upstream 30793 40659954 ~ 40661324 (-)
XLOC_033046 NA non-coding downstream 216506 40383424 ~ 40409125 (-)
XLOC_033043 NA non-coding downstream 443111 40173228 ~ 40182520 (-)
XLOC_033038 NA non-coding downstream 581520 40038692 ~ 40044111 (-)
XLOC_033062 CR450814.2 non-coding upstream 38186 40667347 ~ 40667463 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G476661 NA non-coding CI01000333 null 97602 ~ 98020 (+)